View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_139 (Length: 249)
Name: NF6076_high_139
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_139 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 43610052 - 43609811
Alignment:
| Q |
1 |
aagatgctgtcaaatatcatatgaatatttcgtaagatgcatcaaaatttcttaaatgctgatattgtctttatatttattcattcaatggaatcaatta |
100 |
Q |
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| T |
43610052 |
aagatgctgtcaaatatcatatgaatatttcgtaagatgcatcaaaatttcttaaatgctgatattgtctttatatttattcattcaatggaatcaatta |
43609953 |
T |
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| Q |
101 |
atttaggtagataatctttgatattctactattagaaaatgacacaggcaggttgtaactagattagagtctatttgaattcacactatacgctgacatg |
200 |
Q |
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| T |
43609952 |
atttaggtagataatctttgatattctactattagaaaatgacacaggcaggttttaactagattagagtctatttgaattcacactatacgctgacatg |
43609853 |
T |
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| Q |
201 |
tttgatatgtaggatcttataacaagttagatcacctatgct |
242 |
Q |
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| T |
43609852 |
tttgatatgtaggatcttataacaagttagatcacctatgct |
43609811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 43610264 - 43610214
Alignment:
| Q |
10 |
tcaaatatcatatgaatatttcgtaagatgcatcaaaatttcttaaatgct |
60 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
43610264 |
tcaaatatcatatggatatttcgtaagatgcatcaatatttcttaaatgct |
43610214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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