View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_high_14 (Length: 555)
Name: NF6076_high_14
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 19 - 543
Target Start/End: Original strand, 27261236 - 27261760
Alignment:
| Q |
19 |
acttaacttaaaaaacttgccaattagtatagctgaacttagttctttaaacaaatatgcttgaagttaaatattcatatctataagcaagtttgaattc |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27261236 |
acttaacttaaaaaacttaccaattagtatagctgaacttagttctttaaacaaatatgcttgaagttaaatattcatatctataagcaagtttgaattc |
27261335 |
T |
|
| Q |
119 |
nnnnnnngcatagtggtattctagttttcaaagtagcatgttggttaaaccatgtataatattaatgaacttcaattattattgtccatgtttatctact |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27261336 |
tttttttgcatagtggtattctagttttcaaagtagcatgttggttaaaccatgtataatattaatgaacttcaattattattgtccatgtttatctact |
27261435 |
T |
|
| Q |
219 |
tagagcattttcagtagtgtcttgttgagctctagaagttaggaacaggttcttatttgactttaccactagagatggttgaatttcatgtggttgtcac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27261436 |
tagagcattttcagtagtgtcttgttgagctctagaagttaggaacaggttcttatttggctttaccactagagatggttgaatttcatgtggttatcac |
27261535 |
T |
|
| Q |
319 |
attcaacaactttagtgacttaaagtgaaaaagtagacttaagaaagtaggagaaggaaaacaagttgaaagtgagataaggtgagatacatgttacata |
418 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27261536 |
attcaacaactttagtgacttaaaatgaaaaagtagacttaagaaagtaggagaaggaaaacaagttgaaagtgagataaggtgagatacatgttacata |
27261635 |
T |
|
| Q |
419 |
gttggaataaaaaattgttgaaattcttaaaactgatgtggcatggaaagggacattaaaaatggatgaagctattatgattctattcaatgttggacaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27261636 |
gttggaataaaaaattgttgaaattcttaaaactgatgtggcatggaaagggacattaaaaatggatgaagctattatgattctattcaatgttggacaa |
27261735 |
T |
|
| Q |
519 |
gttgtaacttctaagtgatgatgat |
543 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
27261736 |
gttgtaacttctaagtgatgatgat |
27261760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University