View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_141 (Length: 247)

Name: NF6076_high_141
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_141
NF6076_high_141
[»] chr8 (6 HSPs)
chr8 (1-231)||(25892633-25892863)
chr8 (57-231)||(25818383-25818562)
chr8 (183-231)||(2308647-2308695)
chr8 (183-231)||(2313841-2313889)
chr8 (5-49)||(25814433-25814477)
chr8 (5-49)||(25818736-25818780)
[»] chr6 (1 HSPs)
chr6 (137-231)||(34763583-34763677)
[»] chr1 (3 HSPs)
chr1 (137-231)||(29457516-29457610)
chr1 (183-231)||(24645876-24645924)
chr1 (150-231)||(8320235-8320316)
[»] scaffold1235 (1 HSPs)
scaffold1235 (150-231)||(2074-2155)
[»] chr5 (1 HSPs)
chr5 (150-231)||(29736595-29736676)
[»] chr4 (1 HSPs)
chr4 (150-231)||(28402585-28402666)
[»] chr3 (1 HSPs)
chr3 (150-231)||(493592-493673)
[»] chr2 (1 HSPs)
chr2 (150-231)||(22994650-22994731)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 25892633 - 25892863
Alignment:
Q  1 aaggaatatacagatatgatccttacattgtgctagacattattacaaatgatagtaatgagagagagatttagtcaagcaatctgtgatttggtcagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25892633 aaggaatatacagatatgatccttacattgtgctagacattattacaaatgatagtaatgagagagagatttagtcaagcaatctgtgatttggtcagct 25892732  T
Q  101 gtacgtaggaacataagctattgtgattttatcaagttgatctcttacataatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25892733 gtacgtaggaacataagctattgtgattttatcaagttgatctcttacataatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccggattg 25892832  T
Q  201 gatgcaagtgccttagcacttaagttatcac 231  Q
    |||||||||||||||||||||||||||||||    
T  25892833 gatgcaagtgccttagcacttaagttatcac 25892863  T

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Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 57 - 231
Target Start/End: Complemental strand, 25818562 - 25818383
Alignment:
Q  57 aatgagagagagatttagtcaagcaatctgtgatttggtcagctgtacgtaggaacataagctattgtgattttatcaagt------tgatctcttacat 150  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||    ||||||||||||||||||||||||||  ||      |||||||||||||    
T  25818562 aatgagtgagggatttagtcaagcaatctgcgatttggtcagctgta----ggaacataagctattgtgattttatcttgtagcacttgatctcttacat 25818467  T
Q  151 aatgaacatcaatttcaatgtgt---ttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcac 231  Q
    |||| ||||||||||||||||||   ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25818466 aatgcacatcaatttcaatgtgtaatttggaacgagcatgcataaccggattggatgcaagtgccttagcacttaagttatcac 25818383  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 2308695 - 2308647
Alignment:
Q  183 gcatgcataaccagattggatgcaagtgccttagcacttaagttatcac 231  Q
    |||||||||||| ||||||| || |||||||||||||| ||||||||||    
T  2308695 gcatgcataaccggattggaagctagtgccttagcactcaagttatcac 2308647  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 2313889 - 2313841
Alignment:
Q  183 gcatgcataaccagattggatgcaagtgccttagcacttaagttatcac 231  Q
    |||||||||||| ||||||| || |||||||||||||| ||||||||||    
T  2313889 gcatgcataaccggattggaagctagtgccttagcactcaagttatcac 2313841  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 25814477 - 25814433
Alignment:
Q  5 aatatacagatatgatccttacattgtgctagacattattacaaa 49  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||    
T  25814477 aatatacagatataatccttacattgtgctaagcattattacaaa 25814433  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 25818780 - 25818736
Alignment:
Q  5 aatatacagatatgatccttacattgtgctagacattattacaaa 49  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||    
T  25818780 aatatacagatataatccttacattgtgctaagcattattacaaa 25818736  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 34763583 - 34763677
Alignment:
Q  137 ttgatctcttacataatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcac 231  Q
    |||||||||||   | |||||||| ||||||||||||||| | | |||||||||||   |||| |||||||||||||||||||| ||||||||||    
T  34763583 ttgatctcttatgaagtgaacatctatttcaatgtgtttggacctagcatgcataataggatttgatgcaagtgccttagcactcaagttatcac 34763677  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 29457516 - 29457610
Alignment:
Q  137 ttgatctcttacataatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcac 231  Q
    |||||||||||   | |||||||| ||||||||||||||| | | |||||||||||   |||| |||||||||||||||||||| ||||||||||    
T  29457516 ttgatctcttatgaagtgaacatctatttcaatgtgtttggacctagcatgcataataggatttgatgcaagtgccttagcactcaagttatcac 29457610  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 24645876 - 24645924
Alignment:
Q  183 gcatgcataaccagattggatgcaagtgccttagcacttaagttatcac 231  Q
    |||||||||||| ||||||| || |||||||||||||| ||||||||||    
T  24645876 gcatgcataaccggattggaagctagtgccttagcactcaagttatcac 24645924  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 8320235 - 8320316
Alignment:
Q  150 taatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcac 231  Q
    |||||||||||||||||||| || ||  ||||||||||||  ||  |||| || || |||||||| ||||| ||||||||||    
T  8320235 taatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcac 8320316  T

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Target: scaffold1235 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1235
Description:

Target: scaffold1235; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 2155 - 2074
Alignment:
Q  150 taatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcac 231  Q
    |||||||||||||||||||| || ||  ||||||||||||  ||  |||| || || |||||||| ||||| ||||||||||    
T  2155 taatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcac 2074  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 29736595 - 29736676
Alignment:
Q  150 taatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcac 231  Q
    |||||||||||||||||||| || ||  ||||||||||||  ||  |||| || || |||||||| ||||| ||||||||||    
T  29736595 taatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcac 29736676  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 28402666 - 28402585
Alignment:
Q  150 taatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcac 231  Q
    |||||||||||||||||||| || ||  ||||||||||||  ||  |||| || || |||||||| ||||| ||||||||||    
T  28402666 taatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcac 28402585  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 493673 - 493592
Alignment:
Q  150 taatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcac 231  Q
    |||||||||||||||||||| || ||  ||||||||||||  ||  |||| || || |||||||| ||||| ||||||||||    
T  493673 taatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcac 493592  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 22994731 - 22994650
Alignment:
Q  150 taatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgccttagcacttaagttatcac 231  Q
    |||||||||||||||||||| || ||  ||||||||||||  ||  |||| || || |||||||| ||||| ||||||||||    
T  22994731 taatgaacatcaatttcaatatgcttagaacgagcatgcaatactggattagaagctagtgccttggcactcaagttatcac 22994650  T

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