View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_142 (Length: 247)
Name: NF6076_high_142
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_142 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 2357603 - 2357814
Alignment:
| Q |
20 |
aggaattgacacaagtgctattacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccac |
119 |
Q |
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| T |
2357603 |
aggaattgacacaagtgctattacccttacttgggcaatatgtttgttactgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccac |
2357702 |
T |
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| Q |
120 |
gttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaaccctaatggctaagattatatccagct |
219 |
Q |
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| T |
2357703 |
gttggaagagataaatgtgtaacaaagtcggatataaacaagttggtgtaccttcaagcgataatcaaagaaacc-------ctaagattatatccagtt |
2357795 |
T |
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| Q |
220 |
ggtcctctctctgctcctc |
238 |
Q |
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|||||||||||||| |||| |
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| T |
2357796 |
ggtcctctctctgcacctc |
2357814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 198
Target Start/End: Original strand, 2362938 - 2363096
Alignment:
| Q |
40 |
ttacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgt |
139 |
Q |
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| T |
2362938 |
ttacccttacatgggcaatatgtttgttgcttagaaatcctctaatattgaaaaaagcaaaagaagaacttgatgctcaagttggaaaagagaggtgtgt |
2363037 |
T |
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| Q |
140 |
aacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa |
198 |
Q |
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| T |
2363038 |
aagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaagaaacactaa |
2363096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 2351287 - 2351465
Alignment:
| Q |
20 |
aggaattgacacaagtgctattacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccac |
119 |
Q |
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||||| |||||||||| | |||| ||||| |||||||||||||| ||||||||||||||| | |||| |||||||||||| |||||||||| ||| |
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| T |
2351287 |
aggaagtgacacaagtagtgttactcttacatgggcaatatgtttactattgaaaaatcctcttgtattgaaaaaagcaaaagaagaacttgacactcac |
2351386 |
T |
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| Q |
120 |
gttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa |
198 |
Q |
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| T |
2351387 |
gttggcaaagaaaggcttgtaaacgagtcggatattggtaagttggtataccttcaagctatagtaaaagaaaccctaa |
2351465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 198
Target Start/End: Original strand, 2368684 - 2368842
Alignment:
| Q |
40 |
ttacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgt |
139 |
Q |
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|||||||||| |||||||||||||||||| | | |||||||| | ||||||||||||||||| ||||||||| || ||||||| ||| | ||||| |
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| T |
2368684 |
ttacccttacatgggcaatatgtttgttacttagaaatcctctaatattggaaaaagcaaaagaagaacttgatactcaagttggaaaagagaggtgtgt |
2368783 |
T |
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| Q |
140 |
aacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa |
198 |
Q |
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|| | || | || ||| | ||||||||||| ||||||| || ||||||||||||||| |
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| T |
2368784 |
aagagagacagacatagacaagttggtgtatcttcaagccattgtcaaagaaaccctaa |
2368842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 2307175 - 2307242
Alignment:
| Q |
42 |
acccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaact |
109 |
Q |
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|||||||| |||||| |||||||| ||||||| ||||||| | | ||||||||||||||| |||||| |
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| T |
2307175 |
acccttacatgggcactatgtttgctattgaacaatcctcttgtaatggaaaaagcaaaagaagaact |
2307242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 4305638 - 4305794
Alignment:
| Q |
42 |
acccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaa |
141 |
Q |
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||||||| |||||||| ||||||||| || ||||||||| | | | ||||||||| ||| |||||||||| |||| ||||| | ||| | ||||||| |
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| T |
4305638 |
acccttatatgggcaatgtgtttgttactggaaaatcctcttgtaatagaaaaagcacaagaagaacttgacatccaagttggcaaagagaggtgtgtaa |
4305737 |
T |
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| Q |
142 |
caaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa |
198 |
Q |
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| T |
4305738 |
aagagtcggatatagacaagttggtataccttcaagcgatagtcaaagaaaccctaa |
4305794 |
T |
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