View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_143 (Length: 247)

Name: NF6076_high_143
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_143
NF6076_high_143
[»] chr5 (24 HSPs)
chr5 (89-237)||(33044962-33045110)
chr5 (20-88)||(39054700-39054768)
chr5 (20-88)||(7552857-7552925)
chr5 (21-88)||(5168297-5168364)
chr5 (21-88)||(7287079-7287146)
chr5 (21-96)||(13168636-13168711)
chr5 (21-88)||(39591794-39591861)
chr5 (21-88)||(39592186-39592253)
chr5 (21-87)||(13309997-13310063)
chr5 (21-88)||(1671656-1671723)
chr5 (21-88)||(17626100-17626167)
chr5 (21-88)||(28306022-28306089)
chr5 (21-87)||(2972438-2972504)
chr5 (21-85)||(8687005-8687069)
chr5 (21-61)||(14051232-14051272)
chr5 (21-88)||(1764338-1764405)
chr5 (21-88)||(18258683-18258750)
chr5 (21-88)||(26791134-26791201)
chr5 (23-82)||(27488003-27488062)
chr5 (21-88)||(33037634-33037701)
chr5 (21-82)||(7076464-7076525)
chr5 (23-88)||(22972233-22972298)
chr5 (24-93)||(42478075-42478144)
chr5 (28-88)||(35634725-35634785)
[»] chr1 (31 HSPs)
chr1 (20-88)||(26207954-26208022)
chr1 (20-88)||(18434908-18434976)
chr1 (24-88)||(19947634-19947698)
chr1 (16-88)||(50149055-50149127)
chr1 (25-88)||(30570642-30570705)
chr1 (21-88)||(31827065-31827132)
chr1 (29-84)||(40328663-40328718)
chr1 (21-88)||(44519041-44519108)
chr1 (23-88)||(25672458-25672523)
chr1 (21-82)||(51137547-51137608)
chr1 (21-88)||(21401512-21401579)
chr1 (21-88)||(46907309-46907376)
chr1 (21-88)||(48470753-48470820)
chr1 (21-87)||(43775320-43775386)
chr1 (21-87)||(45333825-45333891)
chr1 (23-88)||(9566850-9566915)
chr1 (24-84)||(26020970-26021030)
chr1 (24-88)||(30467423-30467487)
chr1 (21-88)||(52576191-52576259)
chr1 (21-88)||(3981916-3981983)
chr1 (21-88)||(26469473-26469540)
chr1 (21-88)||(27464947-27465014)
chr1 (21-88)||(31088295-31088362)
chr1 (21-88)||(33100922-33100989)
chr1 (21-88)||(45121371-45121438)
chr1 (21-88)||(49065254-49065321)
chr1 (21-88)||(50726138-50726205)
chr1 (23-88)||(48103252-48103318)
chr1 (24-85)||(8447854-8447914)
chr1 (21-88)||(2571749-2571817)
chr1 (20-84)||(6809693-6809757)
[»] chr3 (34 HSPs)
chr3 (20-88)||(28539630-28539698)
chr3 (20-88)||(35376971-35377039)
chr3 (22-89)||(44463472-44463539)
chr3 (21-88)||(42889099-42889166)
chr3 (21-88)||(5114192-5114259)
chr3 (21-88)||(37503637-37503704)
chr3 (21-88)||(41309231-41309298)
chr3 (21-88)||(44383303-44383370)
chr3 (21-88)||(46624021-46624088)
chr3 (21-86)||(11630642-11630707)
chr3 (21-84)||(13348028-13348091)
chr3 (21-88)||(21217626-21217693)
chr3 (24-87)||(23155329-23155392)
chr3 (21-88)||(23592572-23592639)
chr3 (21-88)||(23600707-23600774)
chr3 (21-88)||(37056947-37057014)
chr3 (21-88)||(44413285-44413352)
chr3 (21-88)||(52326133-52326200)
chr3 (21-88)||(55151607-55151674)
chr3 (21-86)||(5244343-5244408)
chr3 (23-88)||(35201324-35201389)
chr3 (23-84)||(39630511-39630572)
chr3 (21-57)||(8847224-8847260)
chr3 (21-88)||(19149104-19149171)
chr3 (21-88)||(24256661-24256728)
chr3 (21-88)||(27541392-27541459)
chr3 (21-88)||(32924171-32924238)
chr3 (29-88)||(36670904-36670963)
chr3 (21-84)||(47472443-47472506)
chr3 (21-87)||(42358529-42358595)
chr3 (23-88)||(31157567-31157632)
chr3 (23-88)||(38926744-38926809)
chr3 (23-88)||(44813252-44813317)
chr3 (28-88)||(35597283-35597343)
[»] chr2 (25 HSPs)
chr2 (20-88)||(8848587-8848655)
chr2 (20-88)||(27490620-27490688)
chr2 (23-84)||(29349622-29349683)
chr2 (21-88)||(19633396-19633464)
chr2 (21-88)||(19830297-19830365)
chr2 (21-88)||(3838770-3838837)
chr2 (21-94)||(9207704-9207777)
chr2 (20-88)||(13333060-13333128)
chr2 (21-88)||(1248800-1248867)
chr2 (21-88)||(3097751-3097818)
chr2 (21-88)||(9647246-9647313)
chr2 (21-88)||(9990805-9990872)
chr2 (21-88)||(22888707-22888774)
chr2 (21-88)||(41056637-41056704)
chr2 (21-87)||(6049236-6049302)
chr2 (23-88)||(7698287-7698352)
chr2 (20-84)||(18846724-18846788)
chr2 (21-88)||(2076683-2076750)
chr2 (21-88)||(18254099-18254166)
chr2 (21-88)||(25270472-25270539)
chr2 (21-88)||(32477446-32477513)
chr2 (21-88)||(41195698-41195765)
chr2 (21-88)||(42421788-42421855)
chr2 (35-88)||(42434247-42434300)
chr2 (24-88)||(1907653-1907717)
[»] chr7 (13 HSPs)
chr7 (21-88)||(24614206-24614273)
chr7 (21-88)||(9428530-9428597)
chr7 (23-88)||(38944913-38944978)
chr7 (16-88)||(31445427-31445499)
chr7 (25-88)||(40417892-40417955)
chr7 (21-88)||(46022157-46022224)
chr7 (21-88)||(41189431-41189500)
chr7 (24-88)||(41989630-41989694)
chr7 (21-88)||(7701658-7701725)
chr7 (21-88)||(38956508-38956575)
chr7 (21-88)||(43942746-43942813)
chr7 (23-88)||(38347660-38347726)
chr7 (24-88)||(41018781-41018845)
[»] chr6 (19 HSPs)
chr6 (21-88)||(4820481-4820548)
chr6 (21-88)||(11612302-11612369)
chr6 (20-88)||(277104-277172)
chr6 (23-87)||(3552046-3552110)
chr6 (20-88)||(22079453-22079521)
chr6 (21-88)||(14818046-14818113)
chr6 (21-88)||(16199564-16199631)
chr6 (21-88)||(26595463-26595530)
chr6 (21-88)||(32316818-32316885)
chr6 (21-87)||(2241917-2241982)
chr6 (21-78)||(11014890-11014947)
chr6 (21-85)||(18737460-18737524)
chr6 (21-88)||(552907-552974)
chr6 (21-88)||(1156834-1156901)
chr6 (21-88)||(33430252-33430319)
chr6 (21-88)||(33603170-33603237)
chr6 (21-87)||(30423443-30423509)
chr6 (47-88)||(91801-91842)
chr6 (16-88)||(24900883-24900955)
[»] chr4 (37 HSPs)
chr4 (21-88)||(39195171-39195238)
chr4 (21-88)||(38376380-38376447)
chr4 (21-88)||(2575680-2575747)
chr4 (21-88)||(34616675-34616742)
chr4 (21-88)||(43175098-43175165)
chr4 (21-87)||(19473847-19473913)
chr4 (24-97)||(3316471-3316546)
chr4 (21-88)||(26492121-26492188)
chr4 (21-88)||(26732339-26732406)
chr4 (21-88)||(29175339-29175406)
chr4 (21-88)||(36178020-36178087)
chr4 (21-88)||(38382435-38382502)
chr4 (21-88)||(39440598-39440665)
chr4 (21-88)||(44539848-44539915)
chr4 (21-87)||(46038777-46038841)
chr4 (21-88)||(47181955-47182022)
chr4 (21-88)||(48402087-48402154)
chr4 (21-88)||(56363935-56364002)
chr4 (22-88)||(515535-515601)
chr4 (21-87)||(42395928-42395994)
chr4 (21-86)||(27050978-27051043)
chr4 (23-88)||(31641455-31641520)
chr4 (24-88)||(21777483-21777547)
chr4 (21-88)||(39654938-39655005)
chr4 (21-88)||(51986156-51986223)
chr4 (21-88)||(53801649-53801716)
chr4 (21-87)||(10250406-10250472)
chr4 (21-87)||(11068802-11068868)
chr4 (24-86)||(19748752-19748814)
chr4 (24-86)||(19790992-19791054)
chr4 (21-87)||(24575742-24575808)
chr4 (23-88)||(38510663-38510726)
chr4 (27-88)||(5233560-5233621)
chr4 (21-86)||(37997368-37997433)
chr4 (21-82)||(38134467-38134528)
chr4 (21-62)||(39478551-39478592)
chr4 (24-88)||(47744402-47744467)
[»] chr8 (15 HSPs)
chr8 (20-88)||(37133752-37133820)
chr8 (21-87)||(36816507-36816573)
chr8 (21-88)||(37449315-37449382)
chr8 (23-88)||(32133439-32133504)
chr8 (29-88)||(4054176-4054235)
chr8 (21-88)||(22719554-22719621)
chr8 (21-88)||(24479337-24479404)
chr8 (21-88)||(27325872-27325939)
chr8 (21-88)||(29025374-29025441)
chr8 (21-84)||(34639647-34639710)
chr8 (21-88)||(36660340-36660407)
chr8 (23-85)||(27854661-27854723)
chr8 (16-88)||(23754596-23754668)
chr8 (21-88)||(11253432-11253499)
chr8 (21-84)||(36251440-36251503)
[»] scaffold0148 (1 HSPs)
scaffold0148 (23-88)||(20791-20856)
[»] scaffold0087 (1 HSPs)
scaffold0087 (21-88)||(53251-53318)
[»] scaffold0519 (1 HSPs)
scaffold0519 (21-88)||(11896-11963)
[»] scaffold0098 (1 HSPs)
scaffold0098 (21-84)||(49409-49472)
[»] scaffold0019 (1 HSPs)
scaffold0019 (24-88)||(71478-71542)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 33045110 - 33044962
Alignment:
Q  89 atatatagagaagaatagagtgaatgatgatttatttattattcacactgattcaaatggtggtacaaatgtacaatagtta----tatagcccgtgatt 184  Q
    ||||| ||||||||||||||||||||| ||||||||    ||||||||||||| ||||||||||||||||||||||||||||    ||||||||||||||    
T  33045110 atatagagagaagaatagagtgaatgacgatttatt----attcacactgattgaaatggtggtacaaatgtacaatagttaattatatagcccgtgatt 33045015  T
Q  185 ttgagaacccaaacacaagacacaatcattcatatgctcaaggtttccctttg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33045014 ttgagaacccaaacacaagacacaatcattcatatgctcaaggtttccctttg 33044962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 39054700 - 39054768
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  39054700 atcattttctttgcaaaattttgattatcacaaaagttgtcatctaaatggatgttcaaataacacaac 39054768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 7552925 - 7552857
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||| ||||||||| || ||||||||||| ||||||||||  ||||||||||||||||||    
T  7552925 atcattttctttgcaaaattttggttgtcacaaaagttgtcatctaaatggatgttcaaataacacaac 7552857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 5168297 - 5168364
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||  || ||||||||||| |||| || || |||||||||||||||||||    
T  5168297 tcattttctttgtaaaattttagttgtcacaaaagttgtcatatatatgaatgttcaaataacacaac 5168364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 7287146 - 7287079
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| || ||||||||||| |||  || || |||||||||||||||||||    
T  7287146 tcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaac 7287079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 13168636 - 13168711
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaacatatatag 96  Q
    |||||| |||||||||||||||||| ||||||||||| |||  || || |||||| |||||||||||| |||||||    
T  13168636 tcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatgaatgttgaaataacacaacttatatag 13168711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 39591794 - 39591861
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||| |||| || ||||||| ||| |||| |||||| ||||||||||||||||||    
T  39591794 tcattttctttgtaaaactttggttgtcacaaaggttgtcatataaatagatgttcaaataacacaac 39591861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 39592186 - 39592253
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||| |||| || ||||||| ||| |||| |||||| ||||||||||||||||||    
T  39592186 tcattttctttgtaaaactttggttgtcacaaaggttgtcatataaatagatgttcaaataacacaac 39592253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 13309997 - 13310063
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    ||||||||||||||||| ||||||| || ||||| || ||||||||||  |||||||||||||||||    
T  13309997 tcattttctttgtaaaaatttgattgtctcaaaaattgtcatctaaatggatgttcaaataacacaa 13310063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 1671656 - 1671723
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||||||| ||||||||||| |||  || ||  ||||||||||||||||||    
T  1671656 tcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaac 1671723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 17626100 - 17626167
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  17626100 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 17626167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 28306089 - 28306022
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  28306089 tcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 28306022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 2972438 - 2972504
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    |||||| ||| || ||||||||||| ||||||||||| |||  || |||||||||||||||||||||    
T  2972438 tcatttccttcgtgaaattttgattgtcacaaaagttgtcacatatataaatgttcaaataacacaa 2972504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 8687005 - 8687069
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacac 85  Q
    ||||||||||||||||||||||||| | | ||||||| |||  || || ||||||||||||||||    
T  8687005 tcattttctttgtaaaattttgattgttataaaagttgtcacatatatgaatgttcaaataacac 8687069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 14051272 - 14051232
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatca 61  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  14051272 tcattttctttgtaaaattttggttgtcacaaaagttatca 14051232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 1764338 - 1764405
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||| |||||||||| || ||||||||||| |||  || || |||||||||||||||||||    
T  1764338 tcatttcctttctaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaac 1764405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 18258750 - 18258683
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  18258750 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 18258683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 26791201 - 26791134
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  26791201 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 26791134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 27488003 - 27488062
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataa 82  Q
    |||||||||||||||||||  ||||| ||||| |||||||  ||||| ||||||||||||    
T  27488003 attttctttgtaaaattttagttatctcaaaaattatcataaaaatagatgttcaaataa 27488062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 33037634 - 33037701
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  33037634 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 33037701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 7076525 - 7076464
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataa 82  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || || |||||||||||||    
T  7076525 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataa 7076464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 22972233 - 22972298
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||  || || |||||||| | || |||||  ||||||||||||||||||    
T  22972233 attttctttgtaaaattttagttgtctcaaaagttgttatataaatggatgttcaaataacacaac 22972298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 42478144 - 42478075
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaacatata 93  Q
    |||| ||||||||||| ||||| || ||||||||||||   ||||||||||| |||||||| ||| ||||    
T  42478144 ttttttttgtaaaattatgattgtcgcaaaagttatcaatcaaataaatgtttaaataacataacttata 42478075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 35634785 - 35634725
Alignment:
Q  28 ctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||| |||||| ||||||| |||  || ||  ||||||||||||||||||    
T  35634785 ctttgtaaaattttggttatcataaaagttgtcacatatatggatgttcaaataacacaac 35634725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 26207954 - 26208022
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  26207954 atcattttctttgcaaaattttgattatcacaaaagttataatctaaatagatgttcaaataacacaac 26208022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 18434908 - 18434976
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||| ||||||||| || ||||||||||| ||||||||||| || |||||||||||||||    
T  18434908 atcattttctttgcaaaattttggttgtcacaaaagttgtcatctaaatagattttcaaataacacaac 18434976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 19947698 - 19947634
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||| |||||||||| || || |||||||| |||| |||||||||||||||||||||||||    
T  19947698 ttttctttataaaattttggttgtctcaaaagttgtcatataaataaatgttcaaataacacaac 19947634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 50149055 - 50149127
Alignment:
Q  16 atcaatcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||||||||||| |  |||||||| |||| ||||   ||||||||||||||||||    
T  50149055 atcaatcattttctttgtaaaattttgattgttgcaaaagttgtcatataaaatgatgttcaaataacacaac 50149127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 30570642 - 30570705
Alignment:
Q  25 tttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||||| |  ||||| ||||||| ||||| |||||||||||||||||||    
T  30570642 tttctttgtaaaattttgattgtttcaaaaattatcatataaatgaatgttcaaataacacaac 30570705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 31827065 - 31827132
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||| |||||||||||||| || |  |||||||| ||||||||||| ||||||||||||||||||    
T  31827065 tcattttttttgtaaaattttggttgtatcaaaagttgtcatctaaatagatgttcaaataacacaac 31827132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 40328718 - 40328663
Alignment:
Q  29 tttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataaca 84  Q
    |||||||||||||| ||||  |||||||||||||||||||| ||||||||||||||    
T  40328718 tttgtaaaattttggttatatcaaaagttatcatctaaatagatgttcaaataaca 40328663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 44519108 - 44519041
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| |||||||||||||| |||  || || |||||||||||||||||||    
T  44519108 tcatttcctttgtaaaattttggttatcacaaaagttgtcacatatatgaatgttcaaataacacaac 44519041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 25672458 - 25672523
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||  |||||| |||| |||||    
T  25672458 attttctttgtaaaattttgattatatcaaaagttatcatataaatagttgttcagataatacaac 25672523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 51137608 - 51137547
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataa 82  Q
    ||||| |||||||||||||||| ||||||||||  ||||||| ||||||||| |||||||||    
T  51137608 tcattctctttgtaaaattttgtttatcacaaatattatcatataaataaatattcaaataa 51137547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 21401512 - 21401579
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||||||||| |  |||||||| |||  |||||  ||||||||||||||||||    
T  21401512 tcattttctttgtaaaattttgattgtttcaaaagttgtcacataaatggatgttcaaataacacaac 21401579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 46907309 - 46907376
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| ||||||||||||| || |||||||| || | |||||  ||||||||||||||||||    
T  46907309 tcattttctttataaaattttgattgtctcaaaagttgtcgtataaatggatgttcaaataacacaac 46907376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 48470753 - 48470820
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||||||| ||||||||||| |||  || ||  ||||||||||||||||||    
T  48470753 tcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaac 48470820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 43775320 - 43775386
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    ||||||||||||||||||||||||| ||| ||||||| |||  || || ||| ||||||||||||||    
T  43775320 tcattttctttgtaaaattttgattgtcataaaagttgtcacatatatgaatattcaaataacacaa 43775386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 45333825 - 45333891
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    |||||| |||||||||||||| ||| |||||||| ||||||  || ||| |||||||||||||||||    
T  45333825 tcatttcctttgtaaaattttaattgtcacaaaaattatcacatatatagatgttcaaataacacaa 45333891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 9566915 - 9566850
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||| |||||||||||| || || |||||||| |||| ||| | |||||||||||||||||||    
T  9566915 attttctatgtaaaattttggttgtctcaaaagttgtcatataattgaatgttcaaataacacaac 9566850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 26021030 - 26020970
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataaca 84  Q
    |||| ||||||||||||||||| || |||||| | |||| ||||| |||||||||||||||    
T  26021030 ttttttttgtaaaattttgattgtctcaaaagatgtcatataaatgaatgttcaaataaca 26020970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 30467487 - 30467423
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||| |||  || ||||||||||| |||| ||| || ||||||||||||||||||    
T  30467487 ttttctttgtaaaactttagttgtcacaaaagttgtcatataattagatgttcaaataacacaac 30467423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 52576259 - 52576191
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaat-aaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| ||| ||| || || |||||||||||||||||    
T  52576259 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacctatatgaattgttcaaataacacaac 52576191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 3981983 - 3981916
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||||||||| ||||||| ||| |||  |  ||  ||||||||||||||||||    
T  3981983 tcattttctttgtaaaattttgattgtcacaaatgttgtcacatttatggatgttcaaataacacaac 3981916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 26469473 - 26469540
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  26469473 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 26469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 27465014 - 27464947
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  27465014 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 27464947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 31088295 - 31088362
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||| |||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  31088295 tcattttttttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 31088362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 33100922 - 33100989
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||| |||||||||| || ||||||||||| |||  || || |||||||||||||||||||    
T  33100922 tcatttcctttataaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaac 33100989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 45121438 - 45121371
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  45121438 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 45121371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 49065321 - 49065254
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| |||||   ||| || |||| |||||| || |||||||||||||||    
T  49065321 tcattttctttgtaaaattttggttatctttaaaattgtcatataaatagatattcaaataacacaac 49065254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 50726205 - 50726138
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||| ||||||||| || |||||||| ||||||  || ||  ||||||||||||||||||    
T  50726205 tcattttctttgcaaaattttggttgtcacaaaaattatcacatatatggatgttcaaataacacaac 50726138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 48103318 - 48103252
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatg-ttcaaataacacaac 88  Q
    |||||||||||||||||||| || || |||||||| |||| |||||| ||| |||||||| ||||||    
T  48103318 attttctttgtaaaattttggttgtctcaaaagttgtcatataaatagatgtttcaaatatcacaac 48103252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 8447854 - 8447914
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacac 85  Q
    ||||||||||||| || ||||| ||||| ||||||||| |||||| | ||||||||||||||    
T  8447854 ttttctttgtaaa-ttatgattgtcacataagttatcaactaaatgattgttcaaataacac 8447914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 2571749 - 2571817
Alignment:
Q  21 tcattttctttgt-aaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||| ||||||||| || ||||||||||| |||| |  ||  ||||||||||||||||||    
T  2571749 tcattttctttgttaaaattttggttgtcacaaaagttgtcatatgcatggatgttcaaataacacaac 2571817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 6809693 - 6809757
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataaca 84  Q
    |||||||||| | |||||||||| || || |||||||| |||| |||||  ||||||||||||||    
T  6809693 atcattttctatataaaattttggttgtcccaaaagttgtcatataaatggatgttcaaataaca 6809757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 28539698 - 28539630
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||  ||||||||||||||||||    
T  28539698 atcattttctttgcaaaattttggttatcacaaaagttatcatctaaatggatgttcaaataacacaac 28539630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 35377039 - 35376971
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||||||  ||||||||||||||||||    
T  35377039 atcattttctttgtaaaattttggttgtcacaaaagttgtcatctaaatggatgttcaaataacacaac 35376971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 44463472 - 44463539
Alignment:
Q  22 cattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaaca 89  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||| |  |||||||||||||||||||    
T  44463472 cattttctttgtaaaattttgattatctcaaaagttatcatataatttgatgttcaaataacacaaca 44463539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 42889099 - 42889166
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| ||||  |||||||| ||||||||||| ||||| ||||||||||||    
T  42889099 tcattttctttgtaaaattttggttatatcaaaagttgtcatctaaatagatgtttaaataacacaac 42889166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 5114192 - 5114259
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||||||||| ||| |||| || |||  |||||| ||||||||||||||||||    
T  5114192 tcattttctttgtaaaattttgattgtcataaaaattgtcacataaatagatgttcaaataacacaac 5114259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 37503704 - 37503637
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||| ||||||||| || |||||||||||||||  || ||||||||||||||||||||||    
T  37503704 tcatttcctttgcaaaattttggttgtcacaaaagttatcacatatataaatgttcaaataacacaac 37503637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 41309231 - 41309298
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||||||||| ||||||||||||||   || ||  ||||||||||||||||||    
T  41309231 tcattttctttgtaaaattttgattgtcacaaaagttatcgcatatatggatgttcaaataacacaac 41309298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 44383303 - 44383370
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| ||||||||||||| || |||||||| |||| |||||  ||||||||||||||||||    
T  44383303 tcattttctttataaaattttgattgtctcaaaagttgtcatataaatggatgttcaaataacacaac 44383370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 46624021 - 46624088
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||||||||| |||||||||||||||  |  ||  ||||||||||||||||||    
T  46624021 tcattttctttgtaaaattttgattgtcacaaaagttatcacatgtatggatgttcaaataacacaac 46624088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 11630707 - 11630642
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacaca 86  Q
    ||||||||||||||||||||| ||| || ||||| || |||| ||||| |||||||||||||||||    
T  11630707 tcattttctttgtaaaattttaattgtctcaaaaattgtcatataaatgaatgttcaaataacaca 11630642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 13348091 - 13348028
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataaca 84  Q
    |||||||||||||||||||||| || || |||||||| |||| |||||  ||||||||||||||    
T  13348091 tcattttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgttcaaataaca 13348028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 21217626 - 21217693
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  21217626 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 21217693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 23155392 - 23155329
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    |||||||||||||||| ||||||||  |||||||||||  ||||||  ||||||||||||||||    
T  23155392 ttttctttgtaaaattatgattatcttaaaagttatcaattaaatagttgttcaaataacacaa 23155329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 23592572 - 23592639
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  23592572 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 23592639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 23600707 - 23600774
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  23600707 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 23600774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 37057014 - 37056947
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||| ||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  37057014 tcattttctttgtaaaatattggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 37056947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 44413352 - 44413285
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||| ||| ||||||||||| |||  || ||| ||||||||||||||||||    
T  44413352 tcatttcctttgtaaaattttaattgtcacaaaagttgtcacatatatagatgttcaaataacacaac 44413285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 52326133 - 52326200
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||||||| ||| ||||||| |||| || ||  ||||||||||||||||||    
T  52326133 tcatttcctttgtaaaattttgattgtcataaaagttgtcatatatatggatgttcaaataacacaac 52326200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 55151674 - 55151607
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||| ||| | ||||||||| |||  || ||||||||||||||||||||||    
T  55151674 tcatttcctttgtaaaattttaattgtaacaaaagttgtcacatatataaatgttcaaataacacaac 55151607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 5244343 - 5244408
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacaca 86  Q
    |||||| ||||||||||||||| || |||||||| || |||  || ||||||||||||||||||||    
T  5244343 tcatttcctttgtaaaattttggttgtcacaaaaattgtcacatatataaatgttcaaataacaca 5244408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 35201389 - 35201324
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||| |||||| ||| || |||||||| |||| |||||  ||||||||||||||||||    
T  35201389 attttctttgtataattttaattgtctcaaaagttgtcatttaaatggatgttcaaataacacaac 35201324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 39630572 - 39630511
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataaca 84  Q
    ||||||||||||||||||||||| ||  |||| |||| || |||||| ||||||||||||||    
T  39630572 attttctttgtaaaattttgattgtcttaaaaattattatataaatagatgttcaaataaca 39630511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 8847224 - 8847260
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagtt 57  Q
    ||||||| |||||||||||||||||||||||||||||    
T  8847224 tcattttatttgtaaaattttgattatcacaaaagtt 8847260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 19149104 - 19149171
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||||||| |||||||| || |||  || ||  ||||||||||||||||||    
T  19149104 tcatttcctttgtaaaattttgattgtcacaaaaattgtcacatatatggatgttcaaataacacaac 19149171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 24256728 - 24256661
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||| ||| ||||||||||| |||  || ||| || |||||||||||||||    
T  24256728 tcatttcctttgtaaaattttaattgtcacaaaagttgtcacatatatagattttcaaataacacaac 24256661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 27541459 - 27541392
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  27541459 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 27541392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 32924238 - 32924171
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  32924238 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 32924171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 36670963 - 36670904
Alignment:
Q  29 tttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||| || |||||||||||||||  || ||  ||||||||||||||||||    
T  36670963 tttgtaaaattttggttgtcacaaaagttatcacatatatggatgttcaaataacacaac 36670904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 47472443 - 47472506
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataaca 84  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||| ||||||||||||||    
T  47472443 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatagatgttcaaataaca 47472506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 42358595 - 42358529
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    |||||| ||||| |||||||||||| ||||||||||| |||  || ||  |||||||||||||||||    
T  42358595 tcatttcctttgcaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaa 42358529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 31157632 - 31157567
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||| |||||||||||||||||  ||||| |||||||||  || ||  ||||||||||||||||||    
T  31157632 atttcctttgtaaaattttgatagtcacagaagttatcacatatatggatgttcaaataacacaac 31157567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 38926744 - 38926809
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||| ||||||||||||||| || |||| |||||| |||  || ||| ||||||||||||||||||    
T  38926744 atttcctttgtaaaattttggttgtcacgaaagttgtcacatatatagatgttcaaataacacaac 38926809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 44813252 - 44813317
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||| ||||||||||||||||||  |||||||||| |||  || ||| |||||||||| |||||||    
T  44813252 atttcctttgtaaaattttgattgccacaaaagttgtcacatatatagatgttcaaatcacacaac 44813317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 35597283 - 35597343
Alignment:
Q  28 ctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||| || ||||||||||| |||  || || ||| |||||||||||||||    
T  35597283 ctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatattcaaataacacaac 35597343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 8848655 - 8848587
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  8848655 atcattttctttgcaaaattttgattgtcacaaaaattatcatctaaatagatgttcaaataacacaac 8848587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 27490688 - 27490620
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| ||||  ||||||||||||||||||    
T  27490688 atcattttctttgtaaaattttgattgtcacaaaagttgtcatcaaaatggatgttcaaataacacaac 27490620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 29349622 - 29349683
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataaca 84  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||  ||||| ||||||||    
T  29349622 attttctttgtaaaattttgattgtcacaaaagttgtcatctaaatggatgttgaaataaca 29349683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 19633396 - 19633464
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatc-taaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||||||| ||||||||||||||| | || |||||||||||||||| |||||    
T  19633396 tcatttcctttgtaaaattttgattgtcacaaaagttatcaacatatataaatgttcaaataatacaac 19633464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 19830297 - 19830365
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatc-taaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||||||| ||||||||||||||| | || |||||||||||||||| |||||    
T  19830297 tcatttcctttgtaaaattttgattgtcacaaaagttatcaacatatataaatgttcaaataatacaac 19830365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 3838837 - 3838770
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||| ||||||||||||||| |||  || ||| ||||||||||||||||||    
T  3838837 tcatttcctttgtaaaattttaattatcacaaaagttgtcacatatatagatgttcaaataacacaac 3838770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 9207704 - 9207777
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaacatatat 94  Q
    |||||| ||||||||||||||| || |||||||| ||||||  || ||| |||||||||||||||||| |||||    
T  9207704 tcatttcctttgtaaaattttggttgtcacaaaaattatcacatatatagatgttcaaataacacaacttatat 9207777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 13333128 - 13333060
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  13333128 atcattttctttataaaattttggttgtctcaaaagttgtcatataaatcgatgttcaaataacacaac 13333060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 1248800 - 1248867
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||| ||||||||||||||| |||  || ||  ||||||||||||||||||    
T  1248800 tcatttcctttgtaaaattttaattatcacaaaagttgtcacatatatggatgttcaaataacacaac 1248867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 3097818 - 3097751
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  3097818 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 3097751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 9647246 - 9647313
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||||||   || || |||||||||||||||||||    
T  9647246 tcatttcctttgtaaaattttggttgtcacaaaagttatcgcatatatgaatgttcaaataacacaac 9647313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 9990805 - 9990872
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||| ||| |||||||||||||||  || ||  ||||||||||||||||||    
T  9990805 tcatttcctttgtaaaattttaattgtcacaaaagttatcacatatatggatgttcaaataacacaac 9990872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 22888774 - 22888707
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||||||| ||||||||||| |||  || ||  ||||||||||||||||||    
T  22888774 tcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaac 22888707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 41056704 - 41056637
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  41056704 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 41056637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 6049302 - 6049236
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    |||||| |||||||||||||||||| ||||||||||| |||  || ||  |||||||||||||||||    
T  6049302 tcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaa 6049236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 7698287 - 7698352
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||| |||||||||||||| |||||||||||||||||||  |  ||| |||||| |||||||||||    
T  7698287 atttcctttgtaaaattttaattatcacaaaagttatcacatgtatagatgttctaataacacaac 7698352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 18846724 - 18846788
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataaca 84  Q
    |||||||| |||| |||||||||||| ||| |||| || ||||||||||  ||||||||||||||    
T  18846724 atcattttttttgcaaaattttgattgtcataaaaattgtcatctaaatggatgttcaaataaca 18846788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 2076683 - 2076750
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| || ||||||||||| |||  |  ||  ||||||||||||||||||    
T  2076683 tcattttctttgtaaaattttggttgtcacaaaagttgtcacatctattgatgttcaaataacacaac 2076750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 18254166 - 18254099
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  18254166 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 18254099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 25270539 - 25270472
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || | |||||| |||| |||||  ||||||||||||||||||    
T  25270539 tcattttctttataaaattttggttgtctcgaaagttgtcatataaatggatgttcaaataacacaac 25270472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 32477446 - 32477513
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||| |||||||| || ||||||||||| |||  || || |||||||||||||||||||    
T  32477446 tcatttcctttgtcaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaac 32477513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 41195698 - 41195765
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| | |  || || |||||||||||||||||||    
T  41195698 tcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatgaatgttcaaataacacaac 41195765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 42421855 - 42421788
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||| |||||||||| || ||||||||||| |||  || || |||||||||||||||||||    
T  42421855 tcatttcctttctaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaac 42421788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 42434247 - 42434300
Alignment:
Q  35 aaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||  || |||||||| |||| |||||| ||||||||||||||||||    
T  42434247 aaattttgatcgtctcaaaagttgtcatataaatagatgttcaaataacacaac 42434300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 1907717 - 1907653
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||| || || || ||| | ||||| |||||||||| | |||||||||||||||||    
T  1907717 ttttctttgtaaatttatggttgtcatacaagttgtcatctaaatgattgttcaaataacacaac 1907653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 24614273 - 24614206
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||||||||||||||||||||||  || || |||||||||||||||||||    
T  24614273 tcatttcctttgtaaaattttgattatcacaaaagttatcacatatatgaatgttcaaataacacaac 24614206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 9428530 - 9428597
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| | ||||||||||||||  ||| |||||||| |||||||||||||||||||||||||    
T  9428530 tcattttctttattaaattttgattatctaaaatgttatcatataaataaatgttcaaataacacaac 9428597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 38944913 - 38944978
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||||||| ||  ||||||| |||| ||||| |||||| ||||||||||||    
T  38944913 attttctttgtaaaattttgattgtcttaaaagttgtcatataaatgaatgtttaaataacacaac 38944978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 31445427 - 31445499
Alignment:
Q  16 atcaatcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||| ||||||||||||||||||||||||| |  ||||| ||||||| ||||   ||||||||||||||||||    
T  31445427 atcactcattttctttgtaaaattttgattgttgcaaaaattatcatataaaatgatgttcaaataacacaac 31445499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 40417892 - 40417955
Alignment:
Q  25 tttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||| || || |||||||| || | |||||| ||||||||||||||||||    
T  40417892 tttctttgtaaaattttggttgtctcaaaagttgtcgtataaatagatgttcaaataacacaac 40417955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 46022224 - 46022157
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  46022224 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 46022157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 41189500 - 41189431
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttat--catctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||||||| ||| |||||||||  ||| || || |||||||||||||||||||    
T  41189500 tcatttcctttgtaaaattttgattgtcataaaagttatcacatatatatgaatgttcaaataacacaac 41189431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 41989694 - 41989630
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||| |||||||||||||| || |||||||||||||||  || ||  ||||||||||||||||||    
T  41989694 ttttttttgtaaaattttggttgtcacaaaagttatcacatatatggatgttcaaataacacaac 41989630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 7701658 - 7701725
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| ||||| |||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  7701658 tcattttctttataaaactttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 7701725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 38956575 - 38956508
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  38956575 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 38956508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 43942746 - 43942813
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| ||  ||||||| ||||||  || ||  ||||||||||||||||||    
T  43942746 tcattttctttgtaaaattttggttgccacaaaaattatcacatatatggatgttcaaataacacaac 43942813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 38347660 - 38347726
Alignment:
Q  23 attttctttgtaaaattttgattatcac-aaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||||||| | |||| |||| |  |||||  ||||||||||||||||||    
T  38347660 attttctttgtaaaattttgattatctcaaaaaattattagataaatgtatgttcaaataacacaac 38347726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 41018781 - 41018845
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||| || ||||| ||| ||||||| ||| |||||||  | |||||||||||||||    
T  41018781 ttttctttgtaaatttatgattgtcataaaagttgtcacctaaatagttattcaaataacacaac 41018845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 4820481 - 4820548
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||||||||| || ||||||||||||| ||||||  |||||||||||||||||    
T  4820481 tcattttctttgtaaaattttgattgtctcaaaagttatcatgtaaatagttgttcaaataacacaac 4820548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 11612302 - 11612369
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||||||||||||||| ||||||  || |||||| |||||||||||||||    
T  11612302 tcattttctttgtaaaattttgattatcacaaaaattatcacatatataaatattcaaataacacaac 11612369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 277104 - 277172
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||||||| || |||||||| || |||||||||  |||||| ||||||||||||    
T  277104 atcattttctttgtaaaattttggttgtcacaaaaattgtcatctaaaggaatgtttaaataacacaac 277172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 3552110 - 3552046
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||   ||||||||||||||||    
T  3552110 attttctttgtaaatttatgattatcacaaaagttatcatccaaatggttgttcaaataacacaa 3552046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 22079521 - 22079453
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||| ||||||||| || ||||||||||  ||||||||||  ||||||||||||||||||    
T  22079521 atcattttctttgcaaaattttggttgtcacaaaagtggtcatctaaatggatgttcaaataacacaac 22079453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 14818046 - 14818113
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||| |||||||||| || ||||||||||| |||| || ||||||||||||||||||||||    
T  14818046 tcatttcctttctaaaattttggttgtcacaaaagttgtcatatatataaatgttcaaataacacaac 14818113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 16199564 - 16199631
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  16199564 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 16199631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 26595463 - 26595530
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| || |  |||||||| |||| |||||  ||||||||||||||||||    
T  26595463 tcattttctttgtaaaattttggttgtttcaaaagttgtcatataaatggatgttcaaataacacaac 26595530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 32316885 - 32316818
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  32316885 tcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 32316818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 2241982 - 2241917
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    ||||||||||||||  |||||| || |||||||||||||||| |||| ||| |||||||||||||||    
T  2241982 tcattttctttgtattattttggttgtcacaaaagttatcatgtaaagaaa-gttcaaataacacaa 2241917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 11014947 - 11014890
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaa 78  Q
    ||||||||||  ||||||||||||| || ||||||||||||| |||||| ||||||||    
T  11014947 tcattttcttcataaaattttgattgtctcaaaagttatcatataaatagatgttcaa 11014890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 18737524 - 18737460
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacac 85  Q
    |||||||||||||||||||||| || ||||||||||| |||  || ||  |||||||||||||||    
T  18737524 tcattttctttgtaaaattttggttgtcacaaaagttgtcacatacatggatgttcaaataacac 18737460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 552907 - 552974
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  552907 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 552974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 1156834 - 1156901
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||  |||||||||||| |||||||||||||||  || ||  ||||||||||||||||||    
T  1156834 tcatttcctttacaaaattttgattgtcacaaaagttatcaaatatatggatgttcaaataacacaac 1156901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 33430319 - 33430252
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || || ||||| |||||||||||||    
T  33430319 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgtccaaataacacaac 33430252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 33603237 - 33603170
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||||  |||  ||||||| |||| |||||  ||||||||| ||||||||    
T  33603237 tcattttctttgtaaaattttgacaatcttaaaagttgtcatataaatggatgttcaaaaaacacaac 33603170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 30423509 - 30423443
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    ||||||||||| ||||  ||||||| |  ||||||||||||  |||||| |||||||||||||||||    
T  30423509 tcattttctttataaagctttgattgtatcaaaagttatcacataaatagatgttcaaataacacaa 30423443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 91801 - 91842
Alignment:
Q  47 tcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||| | ||||||||||||||||||||||||||||    
T  91801 tcacaacagttgtaatctaaataaatgttcaaataacacaac 91842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 24900883 - 24900955
Alignment:
Q  16 atcaatcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||| ||||||||||||||||||||| ||| |  |||| ||| |||| ||||   ||||||||||||||||||    
T  24900883 atcactcattttctttgtaaaattttaattgttgcaaatgttgtcatataaaatgatgttcaaataacacaac 24900955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 39195171 - 39195238
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||| ||||||||||||||| ||| |||| |||||| ||||||||||||||||||    
T  39195171 tcattttctttgtaaaactttgattatcacaaatgttgtcatataaatagatgttcaaataacacaac 39195238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 38376447 - 38376380
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||||||||| |||||||| ||||||  || ||| ||||||||||||||||||    
T  38376447 tcattttctttgtaaaattttgattgtcacaaaaattatcacatatatagatgttcaaataacacaac 38376380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 2575747 - 2575680
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||| |||  || ||||||||||| |||| |||||| ||||||||||||||||||    
T  2575747 tcattttctttgtaaaactttagttgtcacaaaagttgtcatataaatagatgttcaaataacacaac 2575680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 34616675 - 34616742
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||| ||||||||||||||||||    
T  34616675 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatagatgttcaaataacacaac 34616742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 43175098 - 43175165
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||||||||||||||||||| |||  || ||  ||||||||||||||||||    
T  43175098 tcatttcctttgtaaaattttgattatcacaaaagttgtcacatatatggatgttcaaataacacaac 43175165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 19473913 - 19473847
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    ||||||||||||||||||||||||| || |||||||| |||| |||||  || ||||||||||||||    
T  19473913 tcattttctttgtaaaattttgattgtctcaaaagttgtcatataaatgcatcttcaaataacacaa 19473847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 3316471 - 3316546
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaat-aacacaaca-tatataga 97  Q
    |||| ||||||||||||||||| || |||||||| ||||||||||  |||||||||| ||||||||| ||||||||    
T  3316471 ttttttttgtaaaattttgattgtctcaaaagttgtcatctaaatggatgttcaaataaacacaacactatataga 3316546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 26492121 - 26492188
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||||||||||||||||| |||||||| || |||  || ||| ||||||||||||||||||    
T  26492121 tcatttcctttgtaaaattttgattgtcacaaaaattgtcacatatatagatgttcaaataacacaac 26492188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 26732339 - 26732406
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  26732339 tcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 26732406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 29175339 - 29175406
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || || |||||||||||||||||||    
T  29175339 tcatttactttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaac 29175406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 36178020 - 36178087
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||| |||||||||  || |||||||||||||||  || ||||||||||||||||||||||    
T  36178020 tcatttcctttataaaattttagttgtcacaaaagttatcacatatataaatgttcaaataacacaac 36178087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 38382435 - 38382502
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  38382435 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 38382502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 39440598 - 39440665
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| |||| ||||||||||||| ||||||||||| |||  || || |||||||||||||||||||    
T  39440598 tcatttcctttctaaaattttgattgtcacaaaagttgtcacatatatgaatgttcaaataacacaac 39440665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 44539848 - 44539915
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || || |||||||||||||||||||    
T  44539848 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaac 44539915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 46038777 - 46038841
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    |||||||||||||||| || ||||||||| ||||||| |||  ||||||| ||||||||||||||||    
T  46038777 tcattttctttgtaaatttatgattatcataaaagttgtca--taaataattgttcaaataacacaa 46038841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 47181955 - 47182022
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  47181955 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 47182022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 48402154 - 48402087
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  48402154 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaac 48402087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 56364002 - 56363935
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||||||||| || || |||||||| |||| |||||  ||||||||||||||||||    
T  56364002 tcattttctttataaaattttggttgtctcaaaagttgtcatgtaaatggatgttcaaataacacaac 56363935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 515601 - 515535
Alignment:
Q  22 cattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||| |||| || |||||||  |||||||| |||| ||||||||| |||||||||||||||    
T  515601 cattttctttataaatttatgattatttcaaaagttgtcatataaataaatattcaaataacacaac 515535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 42395994 - 42395928
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    ||||||| ||||||||| ||| |||||| ||||| ||||||| ||| || |||||||||||||||||    
T  42395994 tcattttttttgtaaaactttaattatctcaaaaattatcatataagtagatgttcaaataacacaa 42395928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 27051043 - 27050978
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacaca 86  Q
    |||||||||||||||||||||| || ||||||||||| |||  |  || |||||||||||||||||    
T  27051043 tcattttctttgtaaaattttggttgtcacaaaagttgtcacatttatgaatgttcaaataacaca 27050978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 31641520 - 31641455
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||| |||| |||||||||| || |||||||||||||||  || || |||||||||||||||||||    
T  31641520 atttcctttataaaattttggttgtcacaaaagttatcacgtatatgaatgttcaaataacacaac 31641455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 21777483 - 21777547
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||| |||||| |||||||||  |||| ||||||| ||||||| |||| ||||||||||||    
T  21777483 ttttctttataaaatcttgattatctaaaaaattatcatataaataattgtttaaataacacaac 21777547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 39654938 - 39655005
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||| || || || ||  |||| ||||||||||||||  |||||||||||||||||    
T  39654938 tcattttctttgtaaatttatggttgtcttaaaaattatcatctaaatagttgttcaaataacacaac 39655005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 51986156 - 51986223
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  51986156 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 51986223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 53801716 - 53801649
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||| || ||||||||||| |||  || ||  ||||||||||||||||||    
T  53801716 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaac 53801649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 10250472 - 10250406
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    |||||||||||||||||||||| || ||||||||||| ||   || ||  |||||||||||||||||    
T  10250472 tcattttctttgtaaaattttggttgtcacaaaagttgtcgcatatatggatgttcaaataacacaa 10250406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 11068802 - 11068868
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    |||||| ||||||||||||||| ||  |||||||||| |||  || || ||||||||||||||||||    
T  11068802 tcatttcctttgtaaaattttggttgccacaaaagttgtcacatatatgaatgttcaaataacacaa 11068868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 19748752 - 19748814
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacaca 86  Q
    ||||||||||||| || ||||| |  |||||||||||| | |||||| |||||||||||||||    
T  19748752 ttttctttgtaaatttatgattgtttcaaaagttatcaccaaaataattgttcaaataacaca 19748814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 19791054 - 19790992
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacaca 86  Q
    ||||||||||||| || ||||| |  |||||||||||| | |||||| |||||||||||||||    
T  19791054 ttttctttgtaaatttatgattgtttcaaaagttatcaccaaaataattgttcaaataacaca 19790992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 24575808 - 24575742
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    |||||| |||| |||||||||| || ||||||||||| |||  || ||| |||||||||||||||||    
T  24575808 tcatttcctttataaaattttggttgtcacaaaagttgtcacatatatagatgttcaaataacacaa 24575742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 38510726 - 38510663
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||| |||| ||||||||||||| |||||||| ||||||  || ||||||||| ||||||||||||    
T  38510726 atttcctttataaaattttgattgtcacaaaaattatca--tatataaatgttgaaataacacaac 38510663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 5233621 - 5233560
Alignment:
Q  27 tctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||| |  |||||||| | |  |||||| ||||||||||||||||||    
T  5233621 tctttgtaaaattttgattgtttcaaaagttgttacataaatagatgttcaaataacacaac 5233560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 37997368 - 37997433
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacaca 86  Q
    |||||||||||||||||||||| || | |||||| ||||||  || ||| ||||||||||| ||||    
T  37997368 tcattttctttgtaaaattttggttgtaacaaaaattatcacatatatagatgttcaaatagcaca 37997433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 38134467 - 38134528
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataa 82  Q
    |||||| ||||||||||||||| |||||||||||||| |||  |  || |||||||||||||    
T  38134467 tcatttcctttgtaaaattttggttatcacaaaagttgtcacatgtatgaatgttcaaataa 38134528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 39478551 - 39478592
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcat 62  Q
    |||||||||||||||||||||| || ||||||||||| ||||    
T  39478551 tcattttctttgtaaaattttggttgtcacaaaagttgtcat 39478592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 47744467 - 47744402
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatc-atctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||| || || || ||||||||||| ||| |||||  |||||||||||||||||    
T  47744467 ttttctttgtaaaattatggttgtcccaaaagttatcaatcaaaatagttgttcaaataacacaac 47744402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 37133820 - 37133752
Alignment:
Q  20 atcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||||||  ||||| ||||||||||||    
T  37133820 atcattttctttgtaaaattttggttgtcacaaaagttgtcatctaaatggatgttaaaataacacaac 37133752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 36816573 - 36816507
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaa 87  Q
    |||||||||||| |||||||||||||||||||||||| |||  || ||| |||||||||||||||||    
T  36816573 tcattttctttgcaaaattttgattatcacaaaagttgtcacatatatagatgttcaaataacacaa 36816507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 37449382 - 37449315
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||||||||||||||||||||||  || ||  || |||||||||||||||    
T  37449382 tcatttcctttgtaaaattttgattatcacaaaagttatcacatatatggatattcaaataacacaac 37449315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 32133439 - 32133504
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||| |||||||||||||| ||||| ||||| ||||||| |||||  ||||||||||||||||||    
T  32133439 attttatttgtaaaattttggttatctcaaaatttatcatataaatggatgttcaaataacacaac 32133504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 4054235 - 4054176
Alignment:
Q  29 tttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||| |||||||| ||||||||||| |||  || ||||||||||||||||||||||    
T  4054235 tttgtaaagttttgattgtcacaaaagttgtcacatatataaatgttcaaataacacaac 4054176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 22719554 - 22719621
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| |||||||||||||| |||  || ||   |||||||||||||||||    
T  22719554 tcattttctttgtaaaattttggttatcacaaaagttgtcacatatatggctgttcaaataacacaac 22719621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 24479337 - 24479404
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||  || |||||||||||||||| || || |||| ||||||||||||||    
T  24479337 tcatttcctttgtaaaattttagttgtcacaaaagttatcatatatatgaatgctcaaataacacaac 24479404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 27325872 - 27325939
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||||||||||||||||||||||| |||||| |||  || ||  ||||||||||||||||||    
T  27325872 tcatttcctttgtaaaattttgattatcacgaaagttgtcacatatatggatgttcaaataacacaac 27325939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 29025374 - 29025441
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| || || |||||||| |||| |||||  ||||| ||||||||||||    
T  29025374 tcattttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgtttaaataacacaac 29025441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 34639647 - 34639710
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataaca 84  Q
    ||||||| ||||||||||||||||| || ||||| ||||||| |||||  ||||||||||||||    
T  34639647 tcattttatttgtaaaattttgattctctcaaaaattatcatgtaaatggatgttcaaataaca 34639710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 36660407 - 36660340
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| ||||||||||||| |||||||||||||||  |  ||  ||||||||||||||||||    
T  36660407 tcattttctttataaaattttgattgtcacaaaagttatcacatttatggatgttcaaataacacaac 36660340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 27854723 - 27854661
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacac 85  Q
    ||||||||||||||||||| ||| ||  ||||||||||||  |||| ||||||||||||||||    
T  27854723 attttctttgtaaaattttaattgtcttaaaagttatcatgaaaatgaatgttcaaataacac 27854661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 23754668 - 23754596
Alignment:
Q  16 atcaatcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||| |||||||||||||||||||||| || |  |||| ||| |||| ||||  |||||||||||||||||||    
T  23754668 atcactcattttctttgtaaaattttggttgttgcaaaggttgtcatataaaataatgttcaaataacacaac 23754596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 11253499 - 11253432
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| |  ||||||||||| |||| |  ||| |||||||||||| |||||    
T  11253499 tcattttctttgtaaaattttggtcgtcacaaaagttgtcatatttatagatgttcaaataatacaac 11253432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 36251440 - 36251503
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataaca 84  Q
    |||||| |||||||||||||||||| |||| ||||||||||  || ||  ||||||||||||||    
T  36251440 tcatttcctttgtaaaattttgattgtcacgaaagttatcacatatatggatgttcaaataaca 36251503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 20856 - 20791
Alignment:
Q  23 attttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||| ||| ||||||||||||||||||||| ||||||| |||||  ||||||||||||||||||    
T  20856 attttccttgcaaaattttgattatcacaaaaattatcatttaaatggatgttcaaataacacaac 20791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 53318 - 53251
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    ||||||||||| |||| ||||| || ||  |||| ||||||| |||||||||||||||||||||||||    
T  53318 tcattttctttataaatttttggttgtctaaaaacttatcatataaataaatgttcaaataacacaac 53251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 11896 - 11963
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||||||||| |  ||||||||||| |||| |  ||| |||||||||||| |||||    
T  11896 tcattttctttgtaaaattttggtcgtcacaaaagttgtcatatttatagatgttcaaataatacaac 11963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 49409 - 49472
Alignment:
Q  21 tcattttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataaca 84  Q
    |||||| ||||||||||||||| |||||||||||||| |||  || ||  ||||||||||||||    
T  49409 tcatttcctttgtaaaattttggttatcacaaaagttgtcacatatatggatgttcaaataaca 49472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 71542 - 71478
Alignment:
Q  24 ttttctttgtaaaattttgattatcacaaaagttatcatctaaataaatgttcaaataacacaac 88  Q
    |||||||||||||||| | ||| |  ||||||||||||   |||||| |||||||||||||||||    
T  71542 ttttctttgtaaaattataattttatcaaaagttatcaaacaaataattgttcaaataacacaac 71478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University