View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_145 (Length: 244)
Name: NF6076_high_145
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_145 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: scaffold0200 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 30951 - 30724
Alignment:
| Q |
17 |
atttttcacatttaaatttttcttggtatttatattatgtagcactgacactttagattaaatatgagtatagtgtttgacatgtgtcggtgtcggacac |
116 |
Q |
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| T |
30951 |
atttttcacatttaaatttttcttagtatttatattatgtagcactgacactttagattaaatatgagtatagtgtttgacatgtgtcggtgtcggacac |
30852 |
T |
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| Q |
117 |
cggcgcaacacaaatacattatatttaatttcttctatttctcaaaatattattattgccgcgtcagtgtaattgtcgttttaagtattcgtatttgttt |
216 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30851 |
cggcacgacacaaatacattatatttaatttcttctatttctcaaaatattattattgccgcgtcagtgtaattgtcgttttaagtattcgtatttgttt |
30752 |
T |
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| Q |
217 |
tggtgcttcatacactcattattctaca |
244 |
Q |
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||||||||||||||||||||||||||| |
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| T |
30751 |
cggtgcttcatacactcattattctaca |
30724 |
T |
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