View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_149 (Length: 243)
Name: NF6076_high_149
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_149 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 55168941 - 55169058
Alignment:
| Q |
107 |
tcttttctattgacaaagatagctgagagcggtgactaataagttaaatatgagttaagagcaacaaaggattaatacgaccctatataaaaatctaagt |
206 |
Q |
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| T |
55168941 |
tcttttctattgacagaggtagctgagagcggcgactaataagttaaatatgagttaaaagtaacaaaggattaatgcgaccctatataaaaatctaagt |
55169040 |
T |
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| Q |
207 |
gactagtttggatataat |
224 |
Q |
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| T |
55169041 |
gactagtttggatataat |
55169058 |
T |
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Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 55164719 - 55164807
Alignment:
| Q |
3 |
agcaccagaagatcccccataaacaggtttgccttttcgctcgctattctcatttatttatttattagataaaccctaataataaataa |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55164719 |
agcaccagaagatcccccataaacaggtttgccttttcgctcgctattctcatttatttatttattagataaaccctaataatagataa |
55164807 |
T |
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