View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_15 (Length: 548)
Name: NF6076_high_15
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 45 - 281
Target Start/End: Complemental strand, 48044121 - 48043874
Alignment:
| Q |
45 |
acaaatagaatcaattgcatcaatgtgaaaactattaagacgatattgtcacatcaatgttgttacaaacttgtaatcgaaa----------ctactacc |
134 |
Q |
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| T |
48044121 |
acaaatagaatcaattgcatcaatgtgaaaactattaagacgatattgtcacatcaatgttgttacaaacttgtaatcggaaggagcacctactactacc |
48044022 |
T |
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| Q |
135 |
taatttgaacttcatttagatcatttatatggccaggtatcacagaggacaattatcatccatttttt-gtgctggaactagcaggtatgatgttgatgc |
233 |
Q |
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| T |
48044021 |
taatttgaacttcatttagatcatttatatggccaggtatcacagaggacaattatcatccatttttttgtgctggaactagcaggtatgatgttgatgc |
48043922 |
T |
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| Q |
234 |
agccgcttatgagaatttacctgcttcaagaagtgaactccatgactt |
281 |
Q |
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| T |
48043921 |
agccgcttatgagaatttacctgcttcaagaagtgaactccatgactt |
48043874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 366 - 548
Target Start/End: Complemental strand, 48043734 - 48043559
Alignment:
| Q |
366 |
gggattccactgctggttctaggt-aataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttg |
464 |
Q |
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| T |
48043734 |
gggattccactgctggttctaggttaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttg |
48043635 |
T |
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| Q |
465 |
atttcaaaaaatttgcnnnnnnncaggatgtgctcgtactttccattcatatgatgttgtttcacatgagcaggggactgaaat |
548 |
Q |
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| T |
48043634 |
atttcaaaaaatttgctttttttcaggatgtgc--------tccattcatatgatgttgtttcacatgagcaggggactgaaat |
48043559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 371 - 548
Target Start/End: Complemental strand, 48051701 - 48051525
Alignment:
| Q |
371 |
tccactgctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttgatttca |
470 |
Q |
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| T |
48051701 |
tccactgctggttctaagtaacaagattgataaacctggggatttgtctaagcaagacctgacagaaaaggtttaagtagtgtgtgatcctatgatttc- |
48051603 |
T |
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| Q |
471 |
aaaaatttgcnnnnnnncaggatgtgctcgtactttccattcatatgatgttgtttcacatgagcaggggactgaaat |
548 |
Q |
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| T |
48051602 |
aaattttagcttttaatcaggatgtgtccgtacttgcctttcatatgatgttgtttcacatgtgcaggggactgaaat |
48051525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 48056968 - 48056891
Alignment:
| Q |
378 |
ctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgt |
455 |
Q |
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| T |
48056968 |
ctggttcttggtaataagattgacaaacctggtgctttgtctaagcaagacacgacagaaaagatgtaagtactgtgt |
48056891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 434
Target Start/End: Complemental strand, 48045552 - 48045485
Alignment:
| Q |
367 |
ggattccactgctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgaca |
434 |
Q |
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| T |
48045552 |
ggattcaattgctggttttaggtaataaaattgacaaacctgacaatttgtctaagcaagacccgaca |
48045485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 48043832 - 48043794
Alignment:
| Q |
283 |
aaagaatggagtgataagggtgatctcagattcaattcc |
321 |
Q |
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| T |
48043832 |
aaagaatggagtgataagggtgatctcagattcgattcc |
48043794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 48044168 - 48044136
Alignment:
| Q |
18 |
accaaatggcatgtcacaatctgcatcacaaat |
50 |
Q |
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| T |
48044168 |
accaaatggcatgtcacaatctgcatcacaaat |
48044136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 48057306 - 48057247
Alignment:
| Q |
58 |
attgcatcaatgtgaaaactattaagacgatattgtcacatcaatgttgttacaaacttg |
117 |
Q |
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| T |
48057306 |
attgcatcaatgtgaaaactattaggatgatattgtttcatcaattttgtagcaaacttg |
48057247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 48057095 - 48057003
Alignment:
| Q |
184 |
caattatcatccattttttgtgctggaactagcaggtatgatgttgatgcagccgcttatgagaatttacctgcttcaagaagtgaactccat |
276 |
Q |
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| T |
48057095 |
caattatcatccactttttttgccggaactctaagttacgttgttgatgcaggtgattatgagaatctacctgtctcaagaaatgaactccat |
48057003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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