View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_high_150 (Length: 243)
Name: NF6076_high_150
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_150 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 3211236 - 3211013
Alignment:
| Q |
17 |
cacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatcaagctaattataag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3211236 |
cacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatcaagctaat---aag |
3211140 |
T |
|
| Q |
117 |
cttgttacttgtgcataaacaaacctaagcatatgttgttgctaataacatacatggcttacaatatgagttacaacatacctgatatagatggaggact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3211139 |
cttgttacttgtgcataaacaaacctaagcatatgttgttgctaataacatacatggcttacaatatgagttacaacatacctgatatagatggaggact |
3211040 |
T |
|
| Q |
217 |
ttcaaatcatgatggtacatgattgtc |
243 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3211039 |
ttcaaatcatgatggtacatgattgtc |
3211013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 3195227 - 3195008
Alignment:
| Q |
21 |
tacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatcaagctaattataagcttg |
120 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3195227 |
tacctaaattgatattcagacacaatattcctctcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatcaagctaat---aagcttg |
3195131 |
T |
|
| Q |
121 |
ttacttgtgcataaacaaacctaagcatatgttgttgctaataacatacatggcttacaatatgagttacaacatacctgatatagatggaggactttca |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3195130 |
ttacttgtgcataaacaaacctaagcatatgttgttgctaataacatacatggcttacaatatgagttacaacatacctgatatagatggaggactttca |
3195031 |
T |
|
| Q |
221 |
aatcatgatggtacatgattgtc |
243 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3195030 |
aatcatgatggtacatgattgtc |
3195008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 3205256 - 3205318
Alignment:
| Q |
181 |
tatgagttacaacatacctgatatagatggaggactttcaaatcatgatggtacatgattgtc |
243 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3205256 |
tatgagttaaagcatacctgatatagatggaggactttcaaatcatgatggtacatgattgtc |
3205318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 3218743 - 3218676
Alignment:
| Q |
17 |
cacctacctaaattgattttcagacacaatattcctctcatcaatcaaacaacatggtagctagtcta |
84 |
Q |
| |
|
|||||||||||||| || ||||| | |||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3218743 |
cacctacctaaatttatattcagcctcaatgttcctctcatcaatcaaacaacatggtagctattcta |
3218676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University