View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_152 (Length: 243)

Name: NF6076_high_152
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_152
NF6076_high_152
[»] scaffold0425 (2 HSPs)
scaffold0425 (12-198)||(4398-4576)
scaffold0425 (149-205)||(3826-3882)
[»] chr7 (3 HSPs)
chr7 (20-205)||(325520-325697)
chr7 (72-174)||(34853249-34853351)
chr7 (149-204)||(325329-325384)
[»] chr2 (2 HSPs)
chr2 (12-124)||(6852535-6852647)
chr2 (157-205)||(35214584-35214632)
[»] chr4 (2 HSPs)
chr4 (72-171)||(31911573-31911672)
chr4 (157-205)||(50656957-50657005)
[»] chr3 (1 HSPs)
chr3 (157-205)||(42423227-42423275)


Alignment Details
Target: scaffold0425 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 4398 - 4576
Alignment:
Q  12 gatgaatgatcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatagtgcattctttttccttttgaaaaaacaaac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4398 gatgaatgatcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatagtgcattctttttccttttgaaaaaacaaac 4497  T
Q  112 aaaattaataaaacctgtttcactcacaggtggcggtaaaaagtgactttcccatggtgggaagattatcaagtgtcctatgtgaaa 198  Q
    ||||||||||||||||||         |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4498 aaaattaataaaacctgt--------gaggtggcggtaaaaagtgactttctcatggtgggaagattatcaagtgtcctatgtgaaa 4576  T

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Target: scaffold0425; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 3882 - 3826
Alignment:
Q  149 aaaaagtgactttcccatggtgggaagattatcaagtgtcctatgtgaaatgccacc 205  Q
    |||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  3882 aaaatgtgactttcccatggtgggaagattttcaagtgtcccatgtgaaatgccacc 3826  T

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Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 325520 - 325697
Alignment:
Q  20 atcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatagtgcattctttttccttttgaaaaaacaaacaaaattaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  325520 atcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattacgattattagatattgcattctttttccttttgaaaaaccaaacaaaattaa 325619  T
Q  120 taaaacctgtttcactcacaggtggcggtaaaaagtgactttcccatggtgggaagattatcaagtgtcctatgtgaaatgccacc 205  Q
    ||||||        |||||||||||||||||||||||| ||||||||||||||||| || |||| ||||| |||| ||||||||||    
T  325620 taaaac--------ctcacaggtggcggtaaaaagtgattttcccatggtgggaaggttttcaaatgtcccatgttaaatgccacc 325697  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 34853249 - 34853351
Alignment:
Q  72 tattagatagtgcattctttttccttttgaaaaaacaaacaaaattaataaaacctgtttcactcacaggtggcggtaaaaagtgactttcccatggtgg 171  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||| || | ||||| |||||||| ||| ||||| ||||||||  ||||||| |||||||    
T  34853249 tattaaatactgcattcttttttcttttgaaaaaacaaacaaaaatagtgaaaccggtttcacttacaagtggcagtaaaaagcaactttcctatggtgg 34853348  T
Q  172 gaa 174  Q
    |||    
T  34853349 gaa 34853351  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 325384 - 325329
Alignment:
Q  149 aaaaagtgactttcccatggtgggaagattatcaagtgtcctatgtgaaatgccac 204  Q
    |||| |||||||| | |||||||||||||| |||||||||| |||| |||||||||    
T  325384 aaaatgtgacttttctatggtgggaagattttcaagtgtcccatgttaaatgccac 325329  T

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Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 6852535 - 6852647
Alignment:
Q  12 gatgaatgatcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatagtgcattctttttccttttgaaaaaacaaac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  6852535 gatgaatgatcaaaagagagaagaaggaaatgatattaatcaaaagaaatatattaagattattagatattgcattcttttcccttttgaaaaaacaaac 6852634  T
Q  112 aaaattaataaaa 124  Q
    |||||||||||||    
T  6852635 aaaattaataaaa 6852647  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 35214632 - 35214584
Alignment:
Q  157 actttcccatggtgggaagattatcaagtgtcctatgtgaaatgccacc 205  Q
    |||||||||||||||||||||| |||||||||  |||| ||||| ||||    
T  35214632 actttcccatggtgggaagattttcaagtgtctcatgttaaatgtcacc 35214584  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 31911672 - 31911573
Alignment:
Q  72 tattagatagtgcattctttttccttttgaaaaaacaaacaaaattaataaaacctgtttcactcacaggtggcggtaaaaagtgactttcccatggtgg 171  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| || | ||||| |||||||| ||| ||||  ||||||||  ||||| |||||||||    
T  31911672 tattaaatactgcattctttttccttttgaaaaaacaaacaaaaatagtgaaaccggtttcacttacaagtggtagtaaaaagcaacttttccatggtgg 31911573  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 50657005 - 50656957
Alignment:
Q  157 actttcccatggtgggaagattatcaagtgtcctatgtgaaatgccacc 205  Q
    ||||| |||||||||||||||| |||||||||  ||||||||| |||||    
T  50657005 acttttccatggtgggaagattttcaagtgtctcatgtgaaataccacc 50656957  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 42423227 - 42423275
Alignment:
Q  157 actttcccatggtgggaagattatcaagtgtcctatgtgaaatgccacc 205  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||    
T  42423227 actttcccatggtgggaagattttcaagtgtctcatgtgaaatgccacc 42423275  T

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