View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_high_155 (Length: 242)
Name: NF6076_high_155
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_155 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 453567 - 453342
Alignment:
| Q |
1 |
ttcttatattgaagtcataagatgcattcaaattggtttattatgtgtgcaacaaaatccagatgatagaccaacaatggaaagaattgtttcatatctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
453567 |
ttcttatattgaagtcataagatgcattcaaattggtttattatgtgtgcaacaaaatccagatgatagaccaacaatggaaagaattgtttcatatctg |
453468 |
T |
|
| Q |
101 |
agtaatgtttcagttgagttaccattgcctcaagagcctggaggtttcatgggtaatagaacgaatcaaataccaagggataatatttcggatcaacgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
453467 |
agtaatgtttcagttgagttaccattgcctcaagagcctggaggtttcatgggtaatagaacgaatcaaataccaagggataacatttcggatcaacgta |
453368 |
T |
|
| Q |
201 |
ataatagcaatactacgggatcctca |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
453367 |
ataatagcaatactacgggatcctca |
453342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 469511 - 469374
Alignment:
| Q |
1 |
ttcttatattgaagtcataagatgcattcaaattggtttattatgtgtgcaacaaaatccagatgatagaccaacaatggaaagaattgtttcatatctg |
100 |
Q |
| |
|
|||| ||| |||||| || | ||||||||| |||||||||||||||| ||| ||||||| ||||||||||| ||||||| | | |||||||||||| |
|
|
| T |
469511 |
ttctcatagtgaagttattaaatgcattcagcttggtttattatgtgttcaagaaaatcctgatgatagacctacaatggcacaagctgtttcatatctc |
469412 |
T |
|
| Q |
101 |
agtaatgtttcagttgagttaccattgcctcaagagcc |
138 |
Q |
| |
|
|||| | ||| |||||| || ||| | |||| |||||| |
|
|
| T |
469411 |
agtagtcttttagttgaattgccacttcctctagagcc |
469374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 47619837 - 47619928
Alignment:
| Q |
8 |
attgaagtcataagatgcattcaaattggtttattatgtgtgcaacaaaatccagatgatagaccaacaatggaaagaattgtttcatatct |
99 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||| ||| |||||||| ||| |||||| ||||||| || | | ||||||||||| |
|
|
| T |
47619837 |
attgaagttataaaatgcattcaaattggtttattatgtgtccaagaaaatccaaatgctagacctacaatggcaacagtcgtttcatatct |
47619928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 47628035 - 47628123
Alignment:
| Q |
29 |
caaattggtttattatgtgtgcaacaaaatccagatgatagaccaacaatggaaagaattgtttcatatctgagtaatgtttcagttga |
117 |
Q |
| |
|
|||||||||||| | ||||| ||| |||||||||||||||| || ||||||| || ||||||||||||| | |||||| ||| |||| |
|
|
| T |
47628035 |
caaattggtttactttgtgtccaagaaaatccagatgataggcctacaatgggaactgttgtttcatatcttaataatgtctcaattga |
47628123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 47584874 - 47584943
Alignment:
| Q |
11 |
gaagtcataagatgcattcaaattggtttattatgtgtgcaacaaaatccagatgatagaccaacaatgg |
80 |
Q |
| |
|
|||||||| | || ||| || |||||||| |||||||| ||| ||||||||||||| ||||| ||||||| |
|
|
| T |
47584874 |
gaagtcatcaaatacatccacattggtttgttatgtgttcaagaaaatccagatgacagacctacaatgg |
47584943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 10401156 - 10401079
Alignment:
| Q |
22 |
atgcattcaaattggtttattatgtgtgcaacaaaatccagatgatagaccaacaatggaaagaattgtttcatatct |
99 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
10401156 |
atgcattcagattggtttattatgtgttcaacagttccctgatgatagaccaacaatggtaacaattgtttcatatct |
10401079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University