View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_high_16 (Length: 546)
Name: NF6076_high_16
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 24053977 - 24054483
Alignment:
| Q |
19 |
attcacagtttcttataatgttatgtgacccttgcttgtggcattgctacccgataccgtctcaattgagtagtaccgttgaaaattgtagtcaaattga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24053977 |
attcacagtttcttataatgttatgtgacccttg----tggcattgctacctgataccgtctcaattgagtagtaccgttgaaaattgtagtcaaattga |
24054072 |
T |
|
| Q |
119 |
ctaatacgtacgtacggtctcaattgtagtttcaacgacatcaaaaatggttgtcattctcgtatattaatcgcagattgtgaaacacatacactcttcg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
24054073 |
ctaatacgtacgtacggtctcaattgtagtttcaacgacatcaaaaatggttgtcattcttgtatattaatcgcggattgtgaaacacatacactctttg |
24054172 |
T |
|
| Q |
219 |
aattagacgtgtcctaatataacacgtgctgtgttcaacactaacacgacactgacacacagttacacttaattgtgtgg--ttttttcaaaattattag |
316 |
Q |
| |
|
||||||||||| ||| ||| ||||| |||||||||||| ||||||||||||||||| |||||||||||||||| ||| |||||| |||||||||| |
|
|
| T |
24054173 |
gattagacgtgtttcaatgtaatacgtgttgtgttcaacaccaacacgacactgacacatagttacacttaattgtatggttttttttttaaattattag |
24054272 |
T |
|
| Q |
317 |
tgatatcggtgtgtc----agtaagtatccgtatcatgtttggtgtctatgtccatatccatgtttcatagatcaattgatatacctttaactcatgata |
412 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24054273 |
tgatatcggtgtgtcagtaagtaagtatccgtatcatattcagtgtatatgtccatatccatgtttcatagatcaattgatatacctttaactcatgata |
24054372 |
T |
|
| Q |
413 |
ataaatcacacctattatacctaattatttaaggacttcaannnnnnnagcaagaatccattttaatgctttaaagtgattgttacatgtttagtccata |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24054373 |
ataaatcacacctattatacctaattatttaaggacttcgatttttttagcaagaatccattttaatgctttaaagtgattgttacatgtttagtccata |
24054472 |
T |
|
| Q |
513 |
aacttcgttaa |
523 |
Q |
| |
|
||||||||||| |
|
|
| T |
24054473 |
aacttcgttaa |
24054483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 34257980 - 34258025
Alignment:
| Q |
338 |
tatccgtatcatgtttggtgtctatgtccatatccatgtttcatag |
383 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||||||||||||| |
|
|
| T |
34257980 |
tatccgtatcatgtccgatgtctatgtccatgtccatgtttcatag |
34258025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University