View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_161 (Length: 240)
Name: NF6076_high_161
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_161 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 41573199 - 41572970
Alignment:
| Q |
11 |
atcatcacaacggataccaattggacctttgtttggaggggcccctttttgtttgggagaatgagttactgacggaattattagaggatttggagagttt |
110 |
Q |
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| T |
41573199 |
atcaacacaacggataccaattggacctttgtttggaggggcccctttttgtttgggagaatgagttactgacggaattattagaggatttggagagttt |
41573100 |
T |
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| Q |
111 |
tagaggctctgtagaagatgatatttgttggtggagaatggagggtaaaggggttttcatggtgaaatctatgtataagaagttggaggtgttgatgcta |
210 |
Q |
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| T |
41573099 |
tagaggctctgtagaagatgatatttgttggtggagaatggagggtaaaggggttttcatggtgaaatctatgtataagaagttggaggtgttgatgcta |
41573000 |
T |
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| Q |
211 |
gcggaaaccacggtctcggttgccttttct |
240 |
Q |
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| T |
41572999 |
gcggaaaccacggtctcggttgccttttct |
41572970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 232
Target Start/End: Original strand, 27753251 - 27753459
Alignment:
| Q |
22 |
ggataccaattggacctttgtttggaggggcccc-tttttgtttgggagaatgagttactgacggaattattagaggatttggagagttttagaggctct |
120 |
Q |
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| T |
27753251 |
ggataccaattggacctttctttggaggcgccccctttttgtttgggagaatgagttactgtcggaattattagaagatttggagagtttcagaggctct |
27753350 |
T |
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| Q |
121 |
gtagaagatgatatttgttggtggagaatggagggtaaaggggttttcatggtgaaatctatgtataagaagttggaggtgttgatgctagcggaaacca |
220 |
Q |
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| T |
27753351 |
atagaagatggtatttggtggtggagattggagggtaacggggtgttctcagtgaaatctatgtataagaagttgga---gttgttgctagcggaaacca |
27753447 |
T |
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| Q |
221 |
cggtctcggttg |
232 |
Q |
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| T |
27753448 |
cggtctcggttg |
27753459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 21942779 - 21942577
Alignment:
| Q |
16 |
cacaacggataccaattggacctttgtttggaggggccc-ctttttgtttgggagaatgagttactgacggaattattagaggatttggagagttttaga |
114 |
Q |
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| T |
21942779 |
cacaacgggtaacaattggaactttgtttggaggcgtccactttttgtttgggagaacgagctattggttgaattattagaggagttggatagttttaga |
21942680 |
T |
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| Q |
115 |
ggctctgtagaagatgatatttgttggtggagaatggagggtaaaggggttttcatggtgaaatctatgtataagaagttggaggtgttgatgctagcgg |
214 |
Q |
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| T |
21942679 |
tcctctatagaagatgatttttggcggtggagattggaggaaaaaggggtttttacggttaaatcaatgtataagaagttggaggtgttgatgttagagg |
21942580 |
T |
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| Q |
215 |
aaa |
217 |
Q |
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||| |
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| T |
21942579 |
aaa |
21942577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 209
Target Start/End: Original strand, 26728268 - 26728449
Alignment:
| Q |
29 |
aattggacctttgtttggaggggcccc-tttttgtttgggagaatgagttactgacggaattattagaggatttggagagttttagaggctctgtagaag |
127 |
Q |
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| T |
26728268 |
aattggacctttgattggaggcgccccctttttgtttgggagaatgagttgctaacggaattattacaagacttggatggctttagagggtctctagagg |
26728367 |
T |
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| Q |
128 |
atgatatttgttggtggagaatggagggtaaaggggttttcatggtgaaatctatgtataagaagttggaggtgttgatgct |
209 |
Q |
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| T |
26728368 |
aggatgcttgatggtggagattggaagggaatggtggatttacggtgaaatctatgtacaagaagttggaggtgttgatgct |
26728449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 1965 - 2018
Alignment:
| Q |
52 |
cccctttttgtttgggagaatgagttactgacggaattattagaggatttggag |
105 |
Q |
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| T |
1965 |
cccctttttgtttgggagaatgatttgctaacggaattgttggcggatttggag |
2018 |
T |
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