View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_163 (Length: 240)
Name: NF6076_high_163
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_163 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41620977 - 41620748
Alignment:
| Q |
1 |
cttgagtagctcatttgtattcctgtgatcatagcttgccacggcctgtgcacattgagttagcatagtccacaaatctacaactgtggcattgttcgta |
100 |
Q |
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| T |
41620977 |
cttgagtagctcatttgtattcctttgatcatagcttgccacggcctgtgcacattgagttagcatagtccacaaatccacaactgtggcattgttcgta |
41620878 |
T |
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| Q |
101 |
gtagatactttcttcgatcgcgaacgtgttgcctttgccttttctcctgaatcaacagtctttgatgcttgttggtgttgagttagtgtccttccttgct |
200 |
Q |
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| T |
41620877 |
gtagatactttcttcgatcgcgaacgtgctgcctttgccttttctcctgaatcaacagtctgtgatgcttgttggtgttgagttagtgtccttccttgct |
41620778 |
T |
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| Q |
201 |
gacaaagaagtacctcatctaagatctctg |
230 |
Q |
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| T |
41620777 |
gacaaagaagtacctcatctaagatctctg |
41620748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 41627283 - 41627055
Alignment:
| Q |
2 |
ttgagtagctcatttgtattcctgtgatcatagcttgccacggcctgtgcacattgagttagcatagtccacaaatctacaactgtggcattgttcgtag |
101 |
Q |
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| T |
41627283 |
ttgagtagctcatctgtattcctttgatcgtagctcgccacagcttgtgcacattgatttagcatggtccacaaatccacagccgcggcattgtttgtcg |
41627184 |
T |
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| Q |
102 |
tagatactttcttcgatcgcgaacgtgttgcctttgccttttctcctgaatcaacagtctttgatgcttgttggtgttgagttagtgtccttccttgctg |
201 |
Q |
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| T |
41627183 |
tagatgctttcttcaaacgcgaatgtgtttcctttgcctttcctcctgaatcaacattatgtgatgcttgttggtattgagtgagagtctttcctttctg |
41627084 |
T |
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| Q |
202 |
acaaagaagtacctcatctaagatctctg |
230 |
Q |
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| T |
41627083 |
ataaagcagtacctcatctaaaatctctg |
41627055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 41624322 - 41624094
Alignment:
| Q |
2 |
ttgagtagctcatttgtattcctgtgatcatagcttgccacggcctgtgcacattgagttagcatagtccacaaatctacaactgtggcattgttcgtag |
101 |
Q |
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||||||||||||| ||||||||| ||||| ||||| ||||| || |||||||||||| | ||||| ||||||||||| ||| | | | |||| ||||||| |
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| T |
41624322 |
ttgagtagctcatctgtattcctttgatcgtagctcgccacagcttgtgcacattgattaagcatggtccacaaatccacagccgcgacatttttcgtag |
41624223 |
T |
|
| Q |
102 |
tagatactttcttcgatcgcgaacgtgttgcctttgccttttctcctgaatcaacagtctttgatgcttgttggtgttgagttagtgtccttccttgctg |
201 |
Q |
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| T |
41624222 |
tagatgctttcttcaaaagcgaatgtgtttccttttcctttcctcctgaatcataattataagatgcttgttggtgttgagtgagagtctttcctgtctg |
41624123 |
T |
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| Q |
202 |
acaaagaagtacctcatctaagatctctg |
230 |
Q |
| |
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| |||| |||||||||||||| ||||||| |
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| T |
41624122 |
ataaagcagtacctcatctaaaatctctg |
41624094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 23930142 - 23930072
Alignment:
| Q |
11 |
tcatttgtattcctgtgatcatagcttgccacggcctgtgcacattgagttagcatagtccacaaatctac |
81 |
Q |
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||||||| |||||| ||||||||||| | || || |||||||||||||||| || |||||| |||||||| |
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| T |
23930142 |
tcatttgcattcctttgatcatagctaccaacagcttgtgcacattgagttaacaaagtccataaatctac |
23930072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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