View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_168 (Length: 239)
Name: NF6076_high_168
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_168 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 47124168 - 47123947
Alignment:
| Q |
1 |
cagttggcttcaccccacctgagttagacccaaacactccctccccaattttcagtggtaacactggactggaggccttttacgcaaggcccaagttgaa |
100 |
Q |
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| T |
47124168 |
cagttggcttcaccccacctgagttagacccaaacactccctccccaattttcagtggtaacactggactggaggccttttacgcaaggcccaagttgaa |
47124069 |
T |
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| Q |
101 |
gaatttcatgtgatcacatgggattcaccaaaagaacaaatttttgaaatagcaaatggtggtgcagccatcatgagggaaggtcccaatcttctcaaat |
200 |
Q |
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| T |
47124068 |
gaatttcatgtgatcacatgggattcaccaaaagaacaaatttttgaaatagcaaatggtggtgcagccatcatgagggaaggtcccaatcttctcaaat |
47123969 |
T |
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| Q |
201 |
tagcaaggaaagaacaatgttt |
222 |
Q |
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| T |
47123968 |
tagcaaggaaagaacaatgttt |
47123947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 783125 - 783267
Alignment:
| Q |
80 |
ttacgcaaggcccaagttgaagaatttcatgtgatcacatgggattcaccaaaagaacaaatttttgaaatagcaaatggtggtgcagccatcatgaggg |
179 |
Q |
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| T |
783125 |
ttacgtaaggcacaagttgaagaattctatgtgatcacatgggagtcacctaaggaacaaatctttgagatgccaactggtggtgcagccataatgagag |
783224 |
T |
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| Q |
180 |
aaggtcccaatcttctcaaattagcaaggaaagaacaatgttt |
222 |
Q |
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| T |
783225 |
aaggtcctaaccttcttaagttagcaaggaaagaacagtgttt |
783267 |
T |
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