View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_170 (Length: 238)

Name: NF6076_high_170
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_170
NF6076_high_170
[»] chr2 (3 HSPs)
chr2 (17-238)||(41621423-41621644)
chr2 (17-238)||(41624769-41624990)
chr2 (17-238)||(41627730-41627951)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 41621644 - 41621423
Alignment:
Q  17 aaaacggtgcactataacttccattgacaactccatggaagaagattttcggattaatcttcctgatgaggttcaacaatgcttctcttggacaattcac 116  Q
    ||||||||||  |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| || |||||||  |||||||||||||||||||     
T  41621644 aaaacggtgcgttataacttccattggcaactccatggaagaagacttttggattaatcttcctgatcagcttcaacacagcttctcttggacaattcaa 41621545  T
Q  117 tgctacagtttcatcaggcaggttcttcattctgtataaacagctaacaagagttacttcattcctgtctatcttcagatcctcaagccggatagtttcc 216  Q
    ||| |||||||||||||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||    
T  41621544 tgccacagtttcatcaggaaggttcttcagtctgtacaaacagctaacaagagttatttcattcctgtctatctttagatcctcgagccggatagtttcc 41621445  T
Q  217 catttctgtgcaatgcagttgt 238  Q
    ||||||||||||||||||||||    
T  41621444 catttctgtgcaatgcagttgt 41621423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 41624990 - 41624769
Alignment:
Q  17 aaaacggtgcactataacttccattgacaactccatggaagaagattttcggattaatcttcctgatgaggttcaacaatgcttctcttggacaattcac 116  Q
    ||||||||||  |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| || |||||||  |||||||||||||||||||     
T  41624990 aaaacggtgcgttataacttccattggcaactccatggaagaagacttttggattaatcttcctgatcagcttcaacacagcttctcttggacaattcaa 41624891  T
Q  117 tgctacagtttcatcaggcaggttcttcattctgtataaacagctaacaagagttacttcattcctgtctatcttcagatcctcaagccggatagtttcc 216  Q
    ||| |||||||||||||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||||||  || ||||| ||||||    
T  41624890 tgccacagtttcatcaggaaggttcttcagtctgtacaaacagctaacaagagttatttcattcctgtctatctttagatccttgagacggatggtttcc 41624791  T
Q  217 catttctgtgcaatgcagttgt 238  Q
    ||||||||||||||| ||||||    
T  41624790 catttctgtgcaatgaagttgt 41624769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 41627951 - 41627730
Alignment:
Q  17 aaaacggtgcactataacttccattgacaactccatggaagaagattttcggattaatcttcctgatgaggttcaacaatgcttctcttggacaattcac 116  Q
    |||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| || |||||||  |||||||||||||||||||     
T  41627951 aaaacggtgcgctataacttccattggcaactccatggaagaagacttttggattaatcttcctgatcagcttcaacacagcttctcttggacaattcaa 41627852  T
Q  117 tgctacagtttcatcaggcaggttcttcattctgtataaacagctaacaagagttacttcattcctgtctatcttcagatcctcaagccggatagtttcc 216  Q
    ||| |||||||||||||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||||||| || | ||  ||||||    
T  41627851 tgccacagtttcatcaggaaggttcttcagtctgtacaaacagctaacaagagttatttcattcctgtctatctttagatcctcgagacagacggtttcc 41627752  T
Q  217 catttctgtgcaatgcagttgt 238  Q
    ||||||||||||||| ||||||    
T  41627751 catttctgtgcaatgaagttgt 41627730  T

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