View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_171 (Length: 238)

Name: NF6076_high_171
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_171
NF6076_high_171
[»] chr8 (9 HSPs)
chr8 (18-238)||(15813689-15813909)
chr8 (41-238)||(15712271-15712468)
chr8 (36-238)||(15697841-15698043)
chr8 (41-203)||(15722873-15723035)
chr8 (30-227)||(15800263-15800460)
chr8 (50-226)||(15704242-15704418)
chr8 (41-226)||(15805838-15806023)
chr8 (42-226)||(15693434-15693618)
chr8 (143-227)||(15792174-15792258)
[»] chr3 (4 HSPs)
chr3 (41-205)||(3080060-3080224)
chr3 (41-205)||(3093936-3094100)
chr3 (66-203)||(4549221-4549358)
chr3 (66-226)||(3120908-3121068)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 15813689 - 15813909
Alignment:
Q  18 aaagaaaatgggaaggtttgtctaaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaa 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15813689 aaagaaaatgggaaggtttgtctaaacatactgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaa 15813788  T
Q  118 agcagcaacctaagagcttcacaaggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctga 217  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15813789 agcagcaacctaagagtttcacaaggtttctatgttgaagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctga 15813888  T
Q  218 aagccttttggctgcaatttc 238  Q
    |||||||||||||||||||||    
T  15813889 aagccttttggctgcaatttc 15813909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 15712271 - 15712468
Alignment:
Q  41 aaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcaca 140  Q
    |||||||| ||||||||||||||  |||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||| ||||| ||||| |||||     
T  15712271 aaacatactgaaaaggtgaaagtcgaggcttgaattttgcatgtactcgtatactagtatcttttcattttgttcaaagcaacaacccaagagtttcacg 15712370  T
Q  141 aggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagccttttggctgcaatttc 238  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  15712371 aggtttctatgttgtagttttgctatgaaaatcacttcattcttgaactcctctaaaccttgacctgatgtttctgaaagccttttggccgcaatttc 15712468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 15697841 - 15698043
Alignment:
Q  36 tgtctaaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagct 135  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||| || |||||||||||||||||||||||| |||||| ||||||||| |||||      
T  15697841 tgtcaaaacataccgaaaaggtgaaagtcaaggcttgaattcggcatgtattcatatactagtatcttttcatttccttcaatgcagcaacccaagagtc 15697940  T
Q  136 tcacaaggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagccttttggctgcaat 235  Q
    |||| |||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||    
T  15697941 tcacgaggtttctgtgttgcagtttagctatgaaaattacttcattcttgaactcctctgaaccttgacccgacgtttctgcaagccttttgactgcaat 15698040  T
Q  236 ttc 238  Q
    |||    
T  15698041 ttc 15698043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 15722873 - 15723035
Alignment:
Q  41 aaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcaca 140  Q
    |||| ||| |||||| ||||||| ||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  15722873 aaacttactgaaaagatgaaagtcaagacttgaatttggcatgtactcatatactaatatcttttcattttcttcaatgcagcaacctaatagcttcaca 15722972  T
Q  141 aggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttga 203  Q
    ||||| || ||||| | ||| |||||||| |||||||||||||||||||||||||||||||||    
T  15722973 aggttcctgtgttgcaatttagctatgaatattacttcattcttaaactcctctaaaccttga 15723035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 15800263 - 15800460
Alignment:
Q  30 aaggtttgtctaaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaaccta 129  Q
    ||||||||| ||| ||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||| | | |||| |||| |||| |    
T  15800263 aaggtttgtttaagcatactgaaaaggtgaaagtcaaggcttgaattcggcatgtactcatatactagtattttttcatctccctcaatgcagtaaccca 15800362  T
Q  130 agagcttcacaaggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagccttttg 227  Q
    |||| ||  |||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||| |||||||||  |||||||| ||||||||||||    
T  15800363 agagttttgcaaggtttctatgttgcagtttagctatgaatattacttcattcttgaactcctctgaaccttgactcgacgtttccgaaagccttttg 15800460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 15704242 - 15704418
Alignment:
Q  50 gaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcacaaggtttcta 149  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||  |||| |||| ||||||||||||||| ||||| ||||||||     
T  15704242 gaaaaggtgaaagtcaaggcttgaatttggcttatagtcatatactagtatcttttcgctttcctcaatgcagcaacctaagagtttcacgaggtttctg 15704341  T
Q  150 tgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagcctttt 226  Q
    ||||  ||||| ||||| || |||||||||||||| || ||||||  ||||||| | |||||||||| |||||||||    
T  15704342 tgtttcagtttagctataaagattacttcattcttgaattcctctgcaccttgatcagacgtttctgcaagcctttt 15704418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 15805838 - 15806023
Alignment:
Q  41 aaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcaca 140  Q
    |||||||||||||||||||||||  |||||||||||| |||  || |||||||| ||||| ||||||||||| || | |||||| || ||||| |||||     
T  15805838 aaacataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagtttcacg 15805937  T
Q  141 aggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagcctttt 226  Q
    |||||||  ||||| || || |||||||| ||||||||||| |  ||||||||| |||||||||| ||| | |||| |||||||||    
T  15805938 aggtttcggtgttgcagattggctatgaagattacttcattttcgaactcctctgaaccttgaccagacatctctgcaagcctttt 15806023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 226
Target Start/End: Original strand, 15693434 - 15693618
Alignment:
Q  42 aacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcacaa 141  Q
    |||||||| || ||||||||||  || |||| ||| |||||| ||||||| || |||| ||| |||||| |||| ||||||||  |||| ||  | ||||    
T  15693434 aacataccaaacaggtgaaagtccagacttgcattcggcataaactcatacacaagtagcttctcatttccttccaagcagcatgctaaaagtcttacaa 15693533  T
Q  142 ggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagcctttt 226  Q
    |||| | |||||| | ||||||||| || |||||||||||||| ||||||||| | |||||||| || |||  ||| ||||||||    
T  15693534 ggttgcgatgttgcaatttcgctataaacattacttcattcttgaactcctctgagccttgaccagaagttcttgagagcctttt 15693618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 15792174 - 15792258
Alignment:
Q  143 gtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagccttttg 227  Q
    |||||| ||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||| | |||| | ||||||||    
T  15792174 gtttctgtgttgcagtttagctatgaagattacttcattcttgaactcctctaaaccttgacctgacatctctgcatgccttttg 15792258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 3080224 - 3080060
Alignment:
Q  41 aaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcaca 140  Q
    ||||||||| || || ||||||| |||||| || |||||||| || |||||||| || | ||||||||| ||||||| ||| ||||| || ||  |||||    
T  3080224 aaacataccaaatagatgaaagtcaaggctagagtttggcatgtattcatatacaagcaacttttcattatcttcaatgcaacaacccaaaagtctcaca 3080125  T
Q  141 aggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacc 205  Q
    |||||||||||||| | ||| || || || |||||||||||||| ||||| ||| ||||||||||    
T  3080124 aggtttctatgttgcaatttagcaataaagattacttcattcttgaactcttctgaaccttgacc 3080060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 3094100 - 3093936
Alignment:
Q  41 aaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcaca 140  Q
    ||||||||| || || ||||||| |||||| || |||||||| || |||||||| || | ||||||||| || |||| ||| ||||| || ||  |||||    
T  3094100 aaacataccaaatagatgaaagtcaaggctagagtttggcatgtattcatatacaagcaacttttcattatcctcaatgcaacaacccaaaagtctcaca 3094001  T
Q  141 aggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacc 205  Q
    |||||||||||||||| ||| ||||| || |||||||||||  | |||||||| |||||||||||    
T  3094000 aggtttctatgttgtaatttagctataaagattacttcatttgtgaactcctccaaaccttgacc 3093936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 203
Target Start/End: Original strand, 4549221 - 4549358
Alignment:
Q  66 aggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcacaaggtttctatgttgtagtttcgcta 165  Q
    ||||| || |||||||| || |||||||  || | ||||||||| || |||| ||| ||||| || ||  |||||||||| |||||||| | ||| ||||    
T  4549221 aggctagagtttggcatgtattcatatagaagcaacttttcattatcctcaatgcaacaacccaatagtctcacaaggttcctatgttgcaatttagcta 4549320  T
Q  166 tgaaaattacttcattcttaaactcctctaaaccttga 203  Q
    | || |||||||||||  | ||||| ||||||||||||    
T  4549321 taaagattacttcatttgtgaactcttctaaaccttga 4549358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 226
Target Start/End: Complemental strand, 3121068 - 3120908
Alignment:
Q  66 aggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcacaaggtttctatgttgtagtttcgcta 165  Q
    ||||||||||| ||||| |||||||| |  || | |||||||||||  |||| |||| || |||| ||  |||||||||| | ||| || | ||| ||||    
T  3121068 aggcttgaattaggcatgtactcatagataagcagcttttcattttgctcaatgcagaaagctaacagtctcacaaggttccgatgctgcaatttggcta 3120969  T
Q  166 tgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagcctttt 226  Q
    | || |||||||||||||| || ||||| | ||||||| | || ||||  |||||||||||    
T  3120968 tcaacattacttcattcttgaattcctcaacaccttgaaccgatgttttcgaaagcctttt 3120908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University