View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_172 (Length: 238)
Name: NF6076_high_172
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_172 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 45 - 231
Target Start/End: Complemental strand, 1050030 - 1049844
Alignment:
| Q |
45 |
tcggtttcgtgaattgttgtacatcatcgcttgtgagtgacttgtctgtagaagatatcggggcttgtccattcggctgataaactgttgggttaacaag |
144 |
Q |
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| T |
1050030 |
tcggtttcgtgaattgttgtacatcatcgcttgtgagtgacttgtttgtagaagatatcggtgcttgtccattcggctgataaactgttgggttaacaag |
1049931 |
T |
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| Q |
145 |
gaaggaacatgaacatacagtgagtgagtattctattttccattactactttcttcaacaaattgcttcaaattttgtatttttgac |
231 |
Q |
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| T |
1049930 |
gaaggaacatgaacatacagtgagtgagtattctattttccattactactttcttcaacaaattgcttcaaattttgtatttttgac |
1049844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 1043804 - 1043629
Alignment:
| Q |
7 |
attgacaatatgaggaatttcatctgtccttaatcttctcggtttcgtgaattgttgtacatcatcgcttgtgagtgacttgtctgtagaagatatcggg |
106 |
Q |
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| T |
1043804 |
attgacaatatgaggaatttcatctgtgcttagccgtctcggtttcgtgaattgttgtacatcattgcttgtgagtgacttgtccgtagaagatatcggt |
1043705 |
T |
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| Q |
107 |
gcttgtccattcggctgataaactgttgggttaacaaggaaggaacatgaacatacagtgagtgagtattctattt |
182 |
Q |
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| T |
1043704 |
gcttgtccatttggctgataaactattcgattcacaaggaaaaaacatgaacatacattgagtgagtattctattt |
1043629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 1033408 - 1033285
Alignment:
| Q |
11 |
acaatatgaggaatttcatctgtccttaatcttctcggtttcgtgaattgttgtacatcatcgcttgtgagtgacttgtctgtagaagatatcggggctt |
110 |
Q |
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| T |
1033408 |
acaatattaggaatttcatctgtccttagccttctcggtggtgagaatttttcaaaatcattgcttgtcagtgacttgtctgtagaagatatcggttctt |
1033309 |
T |
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| Q |
111 |
gtccattcggctgataaactgttg |
134 |
Q |
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| T |
1033308 |
gtccattcggttgaaaacctgttg |
1033285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 1071058 - 1071004
Alignment:
| Q |
80 |
agtgacttgtctgtagaagatatcggggcttgtccattcggctgataaactgttg |
134 |
Q |
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| T |
1071058 |
agtggcttgtctgtagaagatattggtgcttgcccatttggctgataaactgttg |
1071004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 1065323 - 1065267
Alignment:
| Q |
76 |
tgtgagtgacttgtctgtagaagatatcggggcttgtccattcggctgataaactgt |
132 |
Q |
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| T |
1065323 |
tgtgagtgacttgtctgtagatgatattggtgcctgtccatttggctgaaaaactgt |
1065267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 1058259 - 1058205
Alignment:
| Q |
76 |
tgtgagtgacttgtctgtagaagatatcggggcttgtccattcggctgataaact |
130 |
Q |
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| T |
1058259 |
tgtgagtggcttgtctgtaggagatattggtgcctgtccattcggctgaaaaact |
1058205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 1046253 - 1046208
Alignment:
| Q |
86 |
ttgtctgtagaagatatcggggcttgtccattcggctgataaactg |
131 |
Q |
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| T |
1046253 |
ttgtctgtagaagatattggtgcttgtccatttggttgataaactg |
1046208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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