View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_high_175 (Length: 237)
Name: NF6076_high_175
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_175 |
 | |
|
| [»] scaffold0406 (1 HSPs) |
| | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold0006 (3 HSPs) |
| | |
|
| [»] scaffold1514 (1 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 20366548 - 20366765
Alignment:
| Q |
1 |
tgctagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20366548 |
tgctagacttaacgcgcttgaacttgttatcattacccacgtcgtttcggttcctaacagagcttcaaacattgtgtttggattattgcattttggaaaa |
20366647 |
T |
|
| Q |
101 |
tctggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattg |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
20366648 |
tatggatgcaatagaagctttgcaaaatttagaaattcttcgcctttggaaatcttcaatgatcaagttgccaagagaaatagggagattgattcgattg |
20366747 |
T |
|
| Q |
201 |
agaatgcttgatttgagc |
218 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
20366748 |
agaatgcttgacttgagc |
20366765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 20475620 - 20475837
Alignment:
| Q |
1 |
tgctagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20475620 |
tgctagacttaacgcgctggaacttgttatcattacccacatcgtttcggttcctaacagagcttcaaacattgtgtttggattattgcattttggaaaa |
20475719 |
T |
|
| Q |
101 |
tctggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattg |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
20475720 |
tatggatgcaatagaagctttgcaaaatttagaaattcttcgcctttggaaatcttcaatgatcaagttgccaagagaaatagggagattgattcgattg |
20475819 |
T |
|
| Q |
201 |
agaatgcttgatttgagc |
218 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
20475820 |
agaatgcttgacttgagc |
20475837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 13648131 - 13648348
Alignment:
| Q |
1 |
tgctagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaa |
100 |
Q |
| |
|
||||||| ||||| | ||||||||||| ||||||||||||||| ||||| || |||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13648131 |
tgctagatttaacacacttgaacttgtcatcattacccacatcatttcggttgctaacagaccttcaaacattatgtttggatttttgcattttggaaaa |
13648230 |
T |
|
| Q |
101 |
tctggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattg |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||||| |||||| |||| |||||| |
|
|
| T |
13648231 |
tatggatgcaatagaagctttgcaaaatttagaaattcttagactctgtaaatcttcaatgatcaagttgccaagagaaatagggaaattaactcaatta |
13648330 |
T |
|
| Q |
201 |
agaatgcttgatttgagc |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13648331 |
agaatgcttgatttgagc |
13648348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 19140903 - 19140686
Alignment:
| Q |
1 |
tgctagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaa |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
19140903 |
tgctagatttaacgcgcttgaacttgttatcattacccacatcgtttcggttattaacagaccttcaaacattgtgtttggatcaatgtgttttggaaaa |
19140804 |
T |
|
| Q |
101 |
tctggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattg |
200 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||| |||||||||| |||||||| |
|
|
| T |
19140803 |
tatggatgcactagaagctttgcaaaatttagaaattctttgccttcggaaatcttcaatgaccaagttgccaagagaaatagggagattgcttcaattg |
19140704 |
T |
|
| Q |
201 |
agaatgcttgatttgagc |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19140703 |
agaatgcttgatttgagc |
19140686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 13682757 - 13682974
Alignment:
| Q |
1 |
tgctagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaa |
100 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||||||||| || ||| |||||||||| |
|
|
| T |
13682757 |
tgctagatttaacgcacttgaacttgttatcattacccacatcgtttcggttattaagagaccttcaaacattgtgtttgcatcaatgcgttttggaaaa |
13682856 |
T |
|
| Q |
101 |
tctggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattg |
200 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
13682857 |
tatggatgcactagaagctttgcaaaatttagaaattctttgcctttggaaatcttcaatgatcaagttgccaagagaaatagggagattgattcgattg |
13682956 |
T |
|
| Q |
201 |
agaatgcttgatttgagc |
218 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
13682957 |
agaatgcttgacttgagc |
13682974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 13582411 - 13582607
Alignment:
| Q |
22 |
acttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatctggatgcaatagaagcttt |
121 |
Q |
| |
|
|||||| ||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
13582411 |
acttgtcatcattacccacatcatttcggttactaacagaacttcaaacattgtgtttggatttttgtattttggaaaatatggatgcaatagaagcttt |
13582510 |
T |
|
| Q |
122 |
gcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgagaatgcttgatttgagc |
218 |
Q |
| |
|
||||||||||||||||||| | |||| || || |||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
13582511 |
gcaaaatttagaaattcttagactctggaattcttcaatgatcaagttgccaagagaaatagagaaattgactcaattgagaatgcttgatttgagc |
13582607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 13504084 - 13504298
Alignment:
| Q |
4 |
tagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatct |
103 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||| || ||| ||||||||||| | |
|
|
| T |
13504084 |
tagatttaacgggcttgaacttgttgtcattacccacatcgtttcggttattaacagaccttcaaacattgtgtttgtatcgatgcgttttggaaaatat |
13504183 |
T |
|
| Q |
104 |
ggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgaga |
203 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
13504184 |
ggatgcactagaagctttgcaaaatttagaaattctttgcctttggaaatcttcaatgatcaagttgccaagagaaatagggagattgattcgattgaga |
13504283 |
T |
|
| Q |
204 |
atgcttgatttgagc |
218 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
13504284 |
atgcttgacttgagc |
13504298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 13608655 - 13608869
Alignment:
| Q |
4 |
tagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatct |
103 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||| || ||| ||||||||||| | |
|
|
| T |
13608655 |
tagatttaacgggcttgaacttgttgtcattacccacatcgtttcggttattaacagaccttcaaacattgtgtttgtatcgatgcgttttggaaaatat |
13608754 |
T |
|
| Q |
104 |
ggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgaga |
203 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
13608755 |
ggatgcactagaagctttgcaaaatttagaaattctttgcctttggaaatcttcaatgatcaagttgccaagagaaatagggagattgattcgattgaga |
13608854 |
T |
|
| Q |
204 |
atgcttgatttgagc |
218 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
13608855 |
atgcttgacttgagc |
13608869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 13668659 - 13668875
Alignment:
| Q |
2 |
gctagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaat |
101 |
Q |
| |
|
|||||| ||||| ||||||| |||||| ||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13668659 |
gctagatttaacatgcttgaagttgttaacattacccacatcatttcggttactaacagaacttcaaacattgtgtttggatttttgtattttggaaaat |
13668758 |
T |
|
| Q |
102 |
ctggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| | |||| || || |||||||||||||||||||||||| ||| || ||| |||||||| |
|
|
| T |
13668759 |
atggatgcaatagaagctttgcaaaatttaaaaattctcagactctggaattcttcaatgatcaagttgccaagagaaatagagaaattgactcaattga |
13668858 |
T |
|
| Q |
202 |
gaatgcttgatttgagc |
218 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
13668859 |
gaatgcttgatttgagc |
13668875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 15901234 - 15901038
Alignment:
| Q |
18 |
ttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatctggatgcaatagaag |
117 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| || ||||||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
15901234 |
ttgaacttgtcatcattacccacatcatttcggtttctaacaggccttcaaacattgtgtttgaatcattgcattttggaaaacatggatgcaatagaag |
15901135 |
T |
|
| Q |
118 |
ctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgagaatgcttgattt |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
15901134 |
ctttgcaaaatttggaaattcttcgcctctggaaatcttcaatgacaaagttgccaagagaaatagggaaattgactcaattgagaatgcttgattt |
15901038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 13541317 - 13541517
Alignment:
| Q |
18 |
ttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatctggatgcaatagaag |
117 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||| || ||||||| ||||||||||||||||||||| ||||||||| |||||| |||| |||||||||| |
|
|
| T |
13541317 |
ttgaagttgtcatcattacccacatcatttcggttgctaacaggccttcaaacattgtgtttggatcattgcattttagaaaatatggaagcaatagaag |
13541416 |
T |
|
| Q |
118 |
ctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgagaatgcttgatttgag |
217 |
Q |
| |
|
|||||||||||||| |||||||||| || | ||||| || |||||||||||||||| |||| |||||||||| || | |||||||||||||||||||| |
|
|
| T |
13541417 |
ctttgcaaaatttaaaaattcttcgtctgtggaaatcttcgatgatcaagttgccaaaagaaatagggagattgattaatttgagaatgcttgatttgag |
13541516 |
T |
|
| Q |
218 |
c |
218 |
Q |
| |
|
| |
|
|
| T |
13541517 |
c |
13541517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 16470428 - 16470240
Alignment:
| Q |
30 |
tcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatctggatgcaatagaagctttgcaaaatt |
129 |
Q |
| |
|
|||||||||| || |||| |||||||| || |||||||| |||||||| || ||||||||||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
16470428 |
tcattacccagttcctttcagttcctaaccgaacttcaaacgttgtgtttaaatctttgcattttggaaaatatagatgcaatagaagctttacaaaatt |
16470329 |
T |
|
| Q |
130 |
tagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgagaatgcttgatttgagc |
218 |
Q |
| |
|
|| |||||||| ||||| || || ||||| |||||||||||||| || |||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
16470328 |
taaaaattcttgacctctctagttcttcaattatcaagttgccaagcgagatagggagattgactaaattgaggatgcttgatttgagc |
16470240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 19346739 - 19346663
Alignment:
| Q |
63 |
cttcaaacattgtgtttggatttttgcattttggaaaatctggatgcaatagaagctttgcaaaatttagaaattct |
139 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| |||||||||||| | || || |||| |||||||||| |
|
|
| T |
19346739 |
cttcaaacattgtgtttggatcattgtgttttggaaaatatggatgcaataggatctctgagaaatctagaaattct |
19346663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10211 - 9995
Alignment:
| Q |
1 |
tgctagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10211 |
tgctagacttaacgcacttgaacttgttatcattacccacatcgtttcggttcctaacagaacttcaaacattgtgtttggatgtttgcattttggaaaa |
10112 |
T |
|
| Q |
101 |
tctggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattg |
200 |
Q |
| |
|
| |||||||||||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10111 |
tacggatgcaatagaagatttgcaaaatttaaaaattcttagactctataaatcctcaatgatcaagttgccaagagaagtagggagattgactcaatta |
10012 |
T |
|
| Q |
201 |
agaatgcttgatttgag |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10011 |
agaatgcttgatttgag |
9995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 22286156 - 22285939
Alignment:
| Q |
1 |
tgctagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaa |
100 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||| |||||| ||| |
|
|
| T |
22286156 |
tgctagatttaacgcacttgaacttgctatcattacccacatcgtttcggttattaacagaccttcaaacattgtgtttggatcaatgcgttttgggaaa |
22286057 |
T |
|
| Q |
101 |
tctggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattg |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
22286056 |
tacggatgcaatagaagctttgcaaaatttagaaattcttcgcctatggaaatcttcaatgatcaagttgccaagagaaataggcagattgattcaattg |
22285957 |
T |
|
| Q |
201 |
agaatgcttgatttgagc |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22285956 |
agaatgcttgatttgagc |
22285939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 21812380 - 21812573
Alignment:
| Q |
30 |
tcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatctggatgcaatagaagctttgcaaaatt |
129 |
Q |
| |
|
||||||||||| | ||| | ||| |||| || ||| |||| |||||||||||| ||| ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
21812380 |
tcattacccactccattttggttcttaacggaccttaaaacgttgtgtttggatcattgtgttttggaaaatatgcatgcaatagaagctttgcaaaatt |
21812479 |
T |
|
| Q |
130 |
tagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgagaatgcttgatttgagctattt |
223 |
Q |
| |
|
||||||||||| || | | || || ||||||| |||||| |||| |||| |||||| ||| |||||||||||||||| |||||||| |||| |
|
|
| T |
21812480 |
tagaaattcttagcttgtggaattcttcaatgaccaagttcccaatagaaatagggaaattgactcaattgagaatgctttatttgagccattt |
21812573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 24554 - 24771
Alignment:
| Q |
1 |
tgctagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaa |
100 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||||||| || ||| |||||||||| |
|
|
| T |
24554 |
tgctagatttaacacgcttgaacatgttatcattacccacatcgtttcggttattaacagaccttcaaacattgtgtttgtatcgatgcgttttggaaaa |
24653 |
T |
|
| Q |
101 |
tctggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattg |
200 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
24654 |
tatggatgcactagaagctttgcaaaatttagaaattctttgcctttggaaatcttcaatgatcaagttgccaagagaaatagggagattgattcgattg |
24753 |
T |
|
| Q |
201 |
agaatgcttgatttgagc |
218 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
24754 |
agaatgcttgacttgagc |
24771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 137315 - 137529
Alignment:
| Q |
4 |
tagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatct |
103 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||| || ||| ||||||||||| | |
|
|
| T |
137315 |
tagatttaacgggcttgaacttgttgtcattacccacatcgtttcggttattaacagaccttcaaacattgtgtttgtatcgatgcgttttggaaaatat |
137414 |
T |
|
| Q |
104 |
ggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgaga |
203 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
137415 |
ggatgcactagaagctttgcaaaatttagaaattctttgcctttggaaatcttcaatgatcaagttgccaagagaaatagggagattgattcgattgaga |
137514 |
T |
|
| Q |
204 |
atgcttgatttgagc |
218 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
137515 |
atgcttgacttgagc |
137529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 166273 - 166489
Alignment:
| Q |
2 |
gctagacttaacgcgcttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaat |
101 |
Q |
| |
|
|||||| ||||| ||||||| |||||| ||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
166273 |
gctagatttaacatgcttgaagttgttaacattacccacatcatttcggttactaacagaacttcaaacattgtgtttggatttttgtattttggaaaat |
166372 |
T |
|
| Q |
102 |
ctggatgcaatagaagctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| | |||| || || |||||||||||||||||||||||| ||| || ||| |||||||| |
|
|
| T |
166373 |
atggatgcaatagaagctttgcaaaatttaaaaattctcagactctggaattcttcaatgatcaagttgccaagagaaatagagaaattgactcaattga |
166472 |
T |
|
| Q |
202 |
gaatgcttgatttgagc |
218 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
166473 |
gaatgcttgatttgagc |
166489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 52936 - 53134
Alignment:
| Q |
19 |
tgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatctggatgcaatagaagc |
118 |
Q |
| |
|
||||||||| ||||||||||| | ||||| |||||||| || |||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
52936 |
tgaacttgtcttcattacccactttgtttcagttcctaaccgatcttcaaacattgtgtttgaatttctgcgttttggaaaatatggatgcaatagaagc |
53035 |
T |
|
| Q |
119 |
tttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgagaatgcttgatttgag |
217 |
Q |
| |
|
||| ||||||| |||||||| |||||| || || ||||||||||||||||||||| || ||||| | | |||||||||||||||||||||||| |
|
|
| T |
53036 |
tttaaaaaatttgaaaattctttgcctctggaattcttcaatgatcaagttgccaagacaaatagggcaactgactcaattgagaatgcttgatttgag |
53134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 38059732 - 38059531
Alignment:
| Q |
17 |
cttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatctggatgcaatagaa |
116 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| | || |||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38059732 |
cttgaacttgtcatcattacccacatcatttaggttgctaacagaccttcaaacattatttttggatttttgcattttggaaaatatggatgcaatagaa |
38059633 |
T |
|
| Q |
117 |
gctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgagaatgcttgatttga |
216 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||| |||||| ||| |||||||| |||||||||||||| |
|
|
| T |
38059632 |
gctttgcaaaatttagaaattcttagactcgggaaatcttcaatgatcaagttgccaagagaaatagggaaattgactcaattgaaaatgcttgatttga |
38059533 |
T |
|
| Q |
217 |
gc |
218 |
Q |
| |
|
|| |
|
|
| T |
38059532 |
gc |
38059531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1514 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold1514
Description:
Target: scaffold1514; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 980 - 1180
Alignment:
| Q |
17 |
cttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatctggatgcaatagaa |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||| ||| ||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
980 |
cttgaacttgttatcattgcccacatcgtttcggttactaaaagaccttcaaacattgtgtttggatcaatgcattttggaaaatatggatgcactagaa |
1079 |
T |
|
| Q |
117 |
gctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgagaatgcttgatttga |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
1080 |
gctttgcaaaatttagaaattctttcccttttgaaatcttcaatgatcaagttgccaagagaaatagggagattgactcaattaagaatgcttgatttga |
1179 |
T |
|
| Q |
217 |
g |
217 |
Q |
| |
|
| |
|
|
| T |
1180 |
g |
1180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 43143 - 42943
Alignment:
| Q |
18 |
ttgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatctggatgcaatagaag |
117 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||| || ||||||| ||||||||||||||||||||| ||||||||| |||||| |||| |||||||||| |
|
|
| T |
43143 |
ttgaagttgtcatcattacccacatcatttcggttgctaacaggccttcaaacattgtgtttggatcattgcattttagaaaatatggaagcaatagaag |
43044 |
T |
|
| Q |
118 |
ctttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgagaatgcttgatttgag |
217 |
Q |
| |
|
|||||||||||||| |||||||||| || | ||||| || |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43043 |
ctttgcaaaatttaaaaattcttcgtctgtggaaatcttcgatgatcaagttgccaaaagaaatagggagattgattcaattgagaatgcttgatttgag |
42944 |
T |
|
| Q |
218 |
c |
218 |
Q |
| |
|
| |
|
|
| T |
42943 |
c |
42943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 20816756 - 20816558
Alignment:
| Q |
19 |
tgaacttgttatcattacccacatcgtttcgtttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatctggatgcaatagaagc |
118 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||||| || ||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
20816756 |
tgaacttgtcttcattacccacttcgtttcagttcctaaccgaccttcaaacattgtgtttaaatttctgcgttttggaaaatatggatgcaatagaagc |
20816657 |
T |
|
| Q |
119 |
tttgcaaaatttagaaattcttcgcctctataaatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgagaatgcttgatttgag |
217 |
Q |
| |
|
||| |||||||| |||||||| |||||| || || ||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
20816656 |
tttacaaaattttaaaattctttgcctctggaattcttcaatgatcaagttgccaagacaaatagggcaattgactcaattgagaatgcttgatttgag |
20816558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 113916 - 114082
Alignment:
| Q |
51 |
ttcctaacagagcttcaaacattgtgtttggatttttgcattttggaaaatctggatgcaatagaagctttgcaaaatttagaaattcttcgcctctata |
150 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||| |||||||| |||||||| |||||| | |
|
|
| T |
113916 |
ttcctaaccgaccttcaaacattgtgtttgaatttctgcgttttggaaaatatggatgcaatagaagctttacaaaatttgaaaattctttgcctctgga |
114015 |
T |
|
| Q |
151 |
aatcctcaatgatcaagttgccaagagaagtagggagattagttcaattgagaatgcttgatttgag |
217 |
Q |
| |
|
| || ||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
114016 |
attcttcaatgatcaagttgccaagacaaatagggcaattgactcaattgagaatgcttgatttgag |
114082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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