View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_177 (Length: 236)
Name: NF6076_high_177
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_177 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 36606457 - 36606650
Alignment:
| Q |
1 |
ttcatcttcccaaactggnnnnnnntcgtagaagaaaatttatcaaacttagttccgactaactcagtaactcagcttcatgttcaaaaccaaccgtcgg |
100 |
Q |
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| T |
36606457 |
ttcatcttcccaaactggaaaaaaatcgtagaagaaaatttatcaaacttagttctgactcactcagtaactcagcttcatgttcaaaaccaaccgtcgg |
36606556 |
T |
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| Q |
101 |
agctgacgaacaaaaaggtaacgacaactttggtttggctgttgttgattctattgaacgtgcgaggtttaaaacagaaaagctaattaatcat |
194 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36606557 |
agctgacgaacaaaaaggtaacgacaaccttggtttggttgttgttgattctattgaacgtgcgaggtttaaaacagaaaagctaattaatcat |
36606650 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 2713763 - 2713821
Alignment:
| Q |
136 |
tggctgttgttgattctattgaacgtgcgaggtttaaaacagaaaagctaattaatcat |
194 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||| |
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| T |
2713763 |
tggctgttgttgattctattgaaattgcgaggttgaaaacaggaaaactaattaatcat |
2713821 |
T |
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