View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_178 (Length: 234)
Name: NF6076_high_178
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_178 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 38635467 - 38635661
Alignment:
| Q |
30 |
tgtgagatgatagaggccaggaattccgggctggaaaggaggagaaaacgagtccagacttcgtctgaatcggcggcagaactgaatgtcttagaaacga |
129 |
Q |
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| T |
38635467 |
tgtgagatgatagaggccaggaattccgagctggaaaggaggagaaaacgagtccagacttcgtctgaatcggcggcagaactgaatgtcttagaaacga |
38635566 |
T |
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| Q |
130 |
cggagagtctgcctgcatcaactggagtcatacgagacagtatgatggcaatgcactcttttggtagtacctctaacgatgtcattcttctctct |
224 |
Q |
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| T |
38635567 |
cggagagtctgcctgcattaactggagtcatacgagacagtatgatggcaatgcactctttcggtagtacctctaacgatgtcattcttttctct |
38635661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 38633720 - 38633881
Alignment:
| Q |
28 |
tgtgtgagatgatagaggccaggaattccgggctggaaaggaggagaaaacgagtccagacttcgtctgaatcggcggcagaactgaatgtcttagaaac |
127 |
Q |
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| T |
38633720 |
tgtgtgaaataatagatgccatgaattgggggacggaaaagaggagaaaacggttccatacatcgtcaaaattggcggcagaatggaatgtcttacaaac |
38633819 |
T |
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| Q |
128 |
gacggagagtctgcctgcatcaactggagtcatacgagacagtatgatggcaatgcactctt |
189 |
Q |
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| T |
38633820 |
gagggagagtcttcccgcgtcaaccggagtcgtacgagacagtataatggcaatgcactctt |
38633881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 35249914 - 35250021
Alignment:
| Q |
82 |
tccagacttcgtctgaatcggcggcagaactgaatgtcttagaaacgacggagagtctgcctgcatcaactggagtcatacgagacagtatgatggcaat |
181 |
Q |
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| T |
35249914 |
tccagacggcgtcggaatcagcggcagaacggagtgtcttagaaacgagggagagtctgacggcgtcaacgggagtcgttcgagagagtatggcggcaat |
35250013 |
T |
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| Q |
182 |
gcactctt |
189 |
Q |
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| T |
35250014 |
gcactctt |
35250021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 45527121 - 45527198
Alignment:
| Q |
96 |
gaatcggcggcagaactgaatgtcttagaaacgacggagagtctgcctgcatcaactggagtcatacgagacagtatg |
173 |
Q |
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| T |
45527121 |
gaatcggcggcagaaaggaaagtcttcgaaacgacggagagtctgccggcgtcaacaggagtcgtacgtgacagtatg |
45527198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 35265654 - 35265756
Alignment:
| Q |
82 |
tccagacttcgtctgaatcggcggcagaactgaatgtcttagaaacgacggagagtctgcctgcatcaactggagtcatacgagacagtatgatggcaat |
181 |
Q |
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||||||| |||| ||||||| ||| || | ||| ||||| |||||||||||||||||||| || ||||||||||| ||||||| | |||| ||||||| |
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| T |
35265654 |
tccagacagcgtcggaatcggaggctgatcggaaagtctttgaaacgacggagagtctgccggcgtcaactggagttgtacgagagactatggtggcaat |
35265753 |
T |
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| Q |
182 |
gca |
184 |
Q |
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||| |
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| T |
35265754 |
gca |
35265756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 185
Target Start/End: Original strand, 35477271 - 35477365
Alignment:
| Q |
91 |
cgtctgaatcggcggcagaactgaatgtcttagaaacgacggagagtctgcctgcatcaactggagtcatacgagacagtatgatggcaatgcac |
185 |
Q |
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| T |
35477271 |
cgtccgaatcagcggcacaacggaatgtcttggaaacgacggagaatctgccggcgtcagctggagtggtacaagatagtatggcggcaatgcac |
35477365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 19266885 - 19266962
Alignment:
| Q |
62 |
ggaaaggaggagaaaacgagtccagacttcgtctgaatcggcggcagaactgaatgtcttagaaacgacggagagtct |
139 |
Q |
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| T |
19266885 |
ggaaaggaggagaaaatgattccagacaatgtcagaatcagcggtagaacggaatgtcttagaaacaatggagagtct |
19266962 |
T |
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