View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_179 (Length: 233)

Name: NF6076_high_179
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_179
NF6076_high_179
[»] chr4 (7 HSPs)
chr4 (1-216)||(27472431-27472646)
chr4 (1-216)||(27465353-27465566)
chr4 (39-144)||(37918641-37918746)
chr4 (39-132)||(33833033-33833126)
chr4 (68-143)||(37075269-37075344)
chr4 (39-144)||(27517903-27518008)
chr4 (41-144)||(50960926-50961029)
[»] chr8 (2 HSPs)
chr8 (39-144)||(36999089-36999194)
chr8 (41-144)||(43735165-43735268)
[»] chr7 (2 HSPs)
chr7 (68-143)||(6998988-6999063)
chr7 (41-144)||(40544535-40544638)
[»] chr6 (1 HSPs)
chr6 (53-144)||(35200651-35200742)
[»] chr5 (1 HSPs)
chr5 (73-144)||(19821-19892)
[»] chr2 (1 HSPs)
chr2 (41-144)||(38504481-38504584)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27472646 - 27472431
Alignment:
Q  1 cctggtcgcgaaagattgtatgcacggtctatcaagcgagtgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctaca 100  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27472646 cctggccgcgaaagattgtatgcacggtctatcaagcgagtgcgtgttttcggggtagtccagagttcaaagggggtatcaatgttattttccatctaca 27472547  T
Q  101 catcctttttatatctctgcacatgttactttgtttgaggatacttgtgacaccagctacatatgattctgcaaaagatgttagtactcatgtgctacct 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27472546 catcctttttatatctctgcacatgttactttctttgaggatacttgtgacaccagctacatatgattctgcaaaagatgttagtactcatgtgctacct 27472447  T
Q  201 attcctttatttgaaa 216  Q
    ||||||||||||||||    
T  27472446 attcctttatttgaaa 27472431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27465566 - 27465353
Alignment:
Q  1 cctggtcgcgaaagattgtatgcacggtctatcaagcgagtgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctaca 100  Q
    |||||||||||||||||||  |||| || ||||||| |  |||||| || ||||||| | ||||||| ||||||||||||||||||||| ||||||||||    
T  27465566 cctggtcgcgaaagattgtcggcacagtttatcaagtg--tgtgtgcttccggggtagttcagagtttaaagggggtatcaatgttattgtccatctaca 27465469  T
Q  101 catcctttttatatctctgcacatgttactttgtttgaggatacttgtgacaccagctacatatgattctgcaaaagatgttagtactcatgtgctacct 200  Q
    ||||| ||||||||||||||| ||||||| || |||||  |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  27465468 catccattttatatctctgcaaatgttacattctttgaaaatacttgtgacaccagctacatctgattctgcaaaagatgatagtactcatgtgctacct 27465369  T
Q  201 attcctttatttgaaa 216  Q
    |||||| |||||||||    
T  27465368 attcctatatttgaaa 27465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 37918746 - 37918641
Alignment:
Q  39 agtgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttactttgtttga 138  Q
    |||| ||||||| |||||| |||| ||||||||  |||||||  ||||||| |||||||||||||| ||||||| |||||||| |||||||||| |||||    
T  37918746 agtgcgtgtttttggggtactccaaagttcaaaaagggtatcggtgttattgtccatctacacatcgtttttatgtctctgcagatgttactttctttga 37918647  T
Q  139 ggatac 144  Q
    ||||||    
T  37918646 ggatac 37918641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 33833033 - 33833126
Alignment:
Q  39 agtgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttacttt 132  Q
    |||| ||||||| |||||| |||| |||||| |  ||| |||  ||||||| |||||||||||||| ||||||| |||||||| ||||||||||    
T  33833033 agtgcgtgtttttggggtactccaaagttcataaagggcatcggtgttattgtccatctacacatcgtttttatgtctctgcagatgttacttt 33833126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 37075269 - 37075344
Alignment:
Q  68 caaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttactttgtttgaggata 143  Q
    |||| ||||||||  ||||||||||||||| |||||| ||||||| | || ||| |||||||||| ||||||||||    
T  37075269 caaaaggggtatcgttgttattttccatctgcacatcgtttttatgtttcagcatatgttactttctttgaggata 37075344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 27517903 - 27518008
Alignment:
Q  39 agtgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttactttgtttga 138  Q
    |||||||||||  |||||| | ||||||||||| |||| |||||||||||| || || ||||| || ||||||| | ||  || |||||||||| |||||    
T  27517903 agtgtgtgtttcaggggtactgcagagttcaaaagggggatcaatgttattgtctatttacacgtcatttttatgtttcgacagatgttactttctttga 27518002  T
Q  139 ggatac 144  Q
     |||||    
T  27518003 tgatac 27518008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 50960926 - 50961029
Alignment:
Q  41 tgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttactttgtttgagg 140  Q
    |||||||||| ||| ||||| |||   |||| |||||||   ||||||| ||||||||||||||  |||||||| || ||| |||||||||| || ||||    
T  50960926 tgtgtgtttttgggctattctagaacccaaaaggggtattggtgttattctccatctacacatcggttttatatttcagcaaatgttactttcttcgagg 50961025  T
Q  141 atac 144  Q
    ||||    
T  50961026 atac 50961029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 36999089 - 36999194
Alignment:
Q  39 agtgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttactttgtttga 138  Q
    |||||||||||| |||||| |||||||||||||  ||||| |  ||||||| |||||||||||||| ||||||| | | |||| |||||||||| |||||    
T  36999089 agtgtgtgttttgggggtactccagagttcaaaaagggtaccggtgttattgtccatctacacatcgtttttatgtttatgcagatgttactttctttga 36999188  T
Q  139 ggatac 144  Q
    ||||||    
T  36999189 ggatac 36999194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 43735165 - 43735268
Alignment:
Q  41 tgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttactttgtttgagg 140  Q
    |||||||||| ||| ||||| |||   |||| ||||||||  ||||||| ||||||||||| ||  |||||||| || ||| |||||||||| || ||||    
T  43735165 tgtgtgtttttgggctattctagaacccaaaaggggtatcggtgttattctccatctacacgtcgcttttatatttcagcagatgttactttcttcgagg 43735264  T
Q  141 atac 144  Q
    ||||    
T  43735265 atac 43735268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 6998988 - 6999063
Alignment:
Q  68 caaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttactttgtttgaggata 143  Q
    |||| ||| |||| |||||||| ||||||||||||||  |||||||| || ||| |||||||||| ||||||||||    
T  6998988 caaaagggttatcgatgttattctccatctacacatcgcttttatatttcagcagatgttactttctttgaggata 6999063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 40544638 - 40544535
Alignment:
Q  41 tgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttactttgtttgagg 140  Q
    |||||||||| ||| ||||| |||   |||| ||||||||  ||||||| ||||||||||| ||  |||||||| || ||| |||||||||| || ||||    
T  40544638 tgtgtgtttttgggctattctagaacccaaaaggggtatcggtgttattctccatctacacgtcgcttttatatttcagcagatgttactttcttcgagg 40544539  T
Q  141 atac 144  Q
    ||||    
T  40544538 atac 40544535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 35200651 - 35200742
Alignment:
Q  53 gggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttactttgtttgaggatac 144  Q
    |||||||| |||||||||| ||| |||  || ||||  |||||||||||||| ||||||| |||| ||| |||||||||| ||||| |||||    
T  35200651 gggtattctagagttcaaatgggatattgatcttatgctccatctacacatcgtttttatgtctcagcaaatgttactttctttgatgatac 35200742  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 19821 - 19892
Alignment:
Q  73 ggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttactttgtttgaggatac 144  Q
    ||||||||| ||||||| ||||||||||| ||  |||||||| || ||| |||||||||| || ||||||||    
T  19821 ggggtatcagtgttattctccatctacacgtcgcttttatatttcagcagatgttactttcttcgaggatac 19892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 38504481 - 38504584
Alignment:
Q  41 tgtgtgttttcggggtattccagagttcaaagggggtatcaatgttattttccatctacacatcctttttatatctctgcacatgttactttgtttgagg 140  Q
    |||||||||| ||| ||||| |||   |||| ||||||||  ||||||| ||||||||||| ||  |||||||| || ||| |||||||||| || ||||    
T  38504481 tgtgtgtttttgggctattctagaacccaaaaggggtatcggtgttattctccatctacacgtcgcttttatatttcagcagatgttactttcttcgagg 38504580  T
Q  141 atac 144  Q
    ||||    
T  38504581 atac 38504584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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