View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_18 (Length: 542)
Name: NF6076_high_18
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 5060284 - 5060585
Alignment:
| Q |
14 |
tactatgaatatgactcggttatagaaacgttacttaagaaattgatcgcagctagtatagagtattatattattttcataaaagtatgagttgtattta |
113 |
Q |
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| T |
5060284 |
tactatgaatatgactcggttatagaaacgttacttaagaaattgatctcagctagtatagagtattatattattttcataaaagtatgagttgtattta |
5060383 |
T |
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| Q |
114 |
atttgagaaaaataattagtgacaattcaaaattcaaacattattgaaaatttgaagtgaggtaaacgggaaggagtggacatgttcattaactgacatg |
213 |
Q |
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| T |
5060384 |
atttgagaaaaataattagtgacaattcaaaattcaaacgttattgaaaatttgaagtgaggtaaacgggaaggagtggacatgttcattaactgacatg |
5060483 |
T |
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| Q |
214 |
gtccttcttctctgcagagtatannnnnnnagggaggttgaattaacggttgaattgaaacttgnnnnnnnagggaggttgaattgaaacttatgatgag |
313 |
Q |
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| T |
5060484 |
gtccttcttctctgcagagagtatttttttagggaggttgaattatcggttgaattgaaacttgtttttttagggaggttgaattgaaacttatgatgag |
5060583 |
T |
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| Q |
314 |
ta |
315 |
Q |
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| T |
5060584 |
ta |
5060585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 430 - 524
Target Start/End: Original strand, 5061440 - 5061534
Alignment:
| Q |
430 |
tttaactttaatttgatagtcattgtagtaaattatttaatttcgaattaattggttagaattttttcttattgctacgtaagtacgcataaaag |
524 |
Q |
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| T |
5061440 |
tttaactttaatttgatagtcattgtagtaatctatttaatttcgacttaattggttagaatttttcctcattgctaagtacgtacgcataaaag |
5061534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 5060629 - 5060699
Alignment:
| Q |
359 |
ggactttgagagggcgaaacaaaaaacaaattgataacaaatagggtaattagttggactcagtccactca |
429 |
Q |
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| T |
5060629 |
ggactttgagagggcgaaacaaaaaacaaattgataacaaatagggtaaatagttggactcaatccactca |
5060699 |
T |
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