View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_189 (Length: 226)
Name: NF6076_high_189
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_189 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 29179009 - 29179157
Alignment:
| Q |
67 |
cttcctcatacaaatagtatttttctatagttattaaaatcaatctaattaatg----taatggaaatat--gtttcagaagcagcatgtgtgggaggga |
160 |
Q |
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| T |
29179009 |
cttcctcatagaaatagtatttttctatagttattaaaatcaatctaattaatgaatgtaatggaaatatatgtttcagaagcagcatgtgtgggaggga |
29179108 |
T |
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| Q |
161 |
aagagtggtatttctacacacaaagagaccgtaaatatgcaacaggact |
209 |
Q |
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| T |
29179109 |
aagagtggtatttctacacacaaagagatcgtaaatatgcaacaggact |
29179157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 29178956 - 29178985
Alignment:
| Q |
13 |
attatactcgcaactatttgttgttctatc |
42 |
Q |
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| T |
29178956 |
attatactcgcaactatttgttgttctatc |
29178985 |
T |
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