View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_high_19 (Length: 523)
Name: NF6076_high_19
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 27 - 359
Target Start/End: Complemental strand, 28996326 - 28995992
Alignment:
| Q |
27 |
tgaggatccttcaactttaaggtatgtaatgtacagctgcatgatatataatgaaatgatgctctcttatttggacttcatgatacattgttttcaaaaa |
126 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28996326 |
tgaggatccttcaactttagggaatgtaatgtacagctgcatgatatataatgaaatgatgctctcttatttggacttcatgatacattgttttcaaaaa |
28996227 |
T |
|
| Q |
127 |
ttcatatttttagcttttgaaaattgagatgttcacaatatgagagcattatgacattgacttgtctagtgatctgggatccattccaccacattatttt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28996226 |
ttcatatttttagcttttgaaaattgagatgttcacaatatgagagcattatgacattgacttgtctagtgatctgggatccattccaccacattatttt |
28996127 |
T |
|
| Q |
227 |
tctgcacatgatatttacatctctcttttgctagaggttttggcccctttagaatttcaaaaccttcattgtacatgtgtatttgcaaat--aaaatttt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28996126 |
tctgcacatgatatttacatctctcttttgctagaggttttggcccctttagaatttcaaaaacttcattgtacatgtgtatttgcaaataaaaaatttt |
28996027 |
T |
|
| Q |
325 |
gtggatctaattaacatcaaaactaagcaatattt |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
28996026 |
gtggatctaattaacatcaaaactaagcaatattt |
28995992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 337 - 423
Target Start/End: Complemental strand, 28995990 - 28995904
Alignment:
| Q |
337 |
aacatcaaaactaagcaatattttagaagtttagaagaaaataagtgattttcgtttgttaaccgataagtttgtgataaaatttta |
423 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28995990 |
aacattaacactaagcaatattttagaagtttagaagaaaataagtgattttcgtttgttaaccgataagtttgtgataaaatttta |
28995904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University