View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_193 (Length: 222)
Name: NF6076_high_193
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_193 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 3698763 - 3698957
Alignment:
| Q |
18 |
agaggaatggcagtcgcccacctcatttctgcaagagcagtggttccattgctcgccacattcttcaacagctgcagaacatgaaccttattgagatgga |
117 |
Q |
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| T |
3698763 |
agaggaatggcagtcgcccacctcatttctgcaagagcagtggttccattgctcgccacattcttcaacagttgcagaacatgaaccttattgagatgga |
3698862 |
T |
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| Q |
118 |
caccaaggggtaaataactcattatccttgttagtttgctatagtttgaaatatggttgtta----caatgaagagaatagtaacagtagaatta |
208 |
Q |
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| T |
3698863 |
caccaaggggtaaataactcattatccttgttagtttgctatagtttacaatacggttgttaccagcaatgaagagaatagtaacagtagaatta |
3698957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 3703707 - 3703777
Alignment:
| Q |
18 |
agaggaatggcagtcgcccacctcatttctgcaagagcagtggttccattgctcgccacattcttcaacag |
88 |
Q |
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| T |
3703707 |
agaggaatggcagtcgcccacctcatttctgcaagagcagtggttccattgctcgccacattcttcaacag |
3703777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 3706871 - 3706928
Alignment:
| Q |
63 |
ccattgctcgccacattcttcaacagctgcagaacatgaaccttattgagatggacac |
120 |
Q |
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| T |
3706871 |
ccattgctcgtcacattctccaacagttgcagaacatggacatcattgaaatggacac |
3706928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 15179489 - 15179378
Alignment:
| Q |
18 |
agaggaatggcagtcgcccacctcatttctgcaagagcagtggttccattgctcgccacattcttcaacagctgcagaacatgaaccttattgagatgga |
117 |
Q |
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|||||||||| ||||| || || ||||||||||||||||||||| | |||||||| ||||||||||||||| || ||||||||||||| || |||||||| |
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| T |
15179489 |
agaggaatggaagtcgtcctccccatttctgcaagagcagtggtgctattgctcgtcacattcttcaacagttggagaacatgaacctcatcgagatgga |
15179390 |
T |
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| Q |
118 |
caccaaggggta |
129 |
Q |
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| T |
15179389 |
taccaaggggta |
15179378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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