View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_195 (Length: 221)

Name: NF6076_high_195
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_195
NF6076_high_195
[»] chr8 (3 HSPs)
chr8 (25-208)||(16686230-16686413)
chr8 (25-200)||(20863814-20863989)
chr8 (39-187)||(1674226-1674374)
[»] chr6 (29 HSPs)
chr6 (25-208)||(4557111-4557294)
chr6 (25-205)||(4570958-4571138)
chr6 (31-200)||(4585628-4585797)
chr6 (39-200)||(4480693-4480854)
chr6 (25-200)||(4579418-4579593)
chr6 (34-208)||(4613681-4613855)
chr6 (39-200)||(4516321-4516482)
chr6 (45-185)||(4504383-4504523)
chr6 (35-187)||(4592227-4592379)
chr6 (25-104)||(4606958-4607037)
chr6 (42-208)||(4267129-4267295)
chr6 (34-200)||(4598166-4598332)
chr6 (36-170)||(4563708-4563842)
chr6 (42-187)||(3171744-3171889)
chr6 (28-109)||(4560495-4560576)
chr6 (39-197)||(4505857-4506015)
chr6 (39-188)||(4515104-4515253)
chr6 (36-200)||(4574305-4574469)
chr6 (39-187)||(4617022-4617170)
chr6 (39-206)||(4461123-4461290)
chr6 (39-123)||(4492955-4493039)
chr6 (45-208)||(4469809-4469972)
chr6 (45-187)||(4490339-4490481)
chr6 (43-110)||(4392087-4392154)
chr6 (42-98)||(4299813-4299869)
chr6 (62-110)||(4568076-4568124)
chr6 (39-98)||(4601789-4601848)
chr6 (42-101)||(4622145-4622204)
chr6 (160-208)||(4457715-4457763)
[»] chr5 (2 HSPs)
chr5 (42-208)||(24103002-24103168)
chr5 (39-187)||(28000083-28000231)
[»] scaffold0288 (1 HSPs)
scaffold0288 (42-208)||(3682-3848)
[»] scaffold0477 (1 HSPs)
scaffold0477 (42-100)||(4757-4815)
[»] chr3 (1 HSPs)
chr3 (39-109)||(1281114-1281184)
[»] chr7 (2 HSPs)
chr7 (45-98)||(3086426-3086479)
chr7 (149-197)||(3086530-3086578)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 16686413 - 16686230
Alignment:
Q  25 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttca 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||  ||||||    
T  16686413 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcgggtcttcgtccaccttca 16686314  T
Q  125 tcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacttcatctc 208  Q
    | | ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||    
T  16686313 tttgcagttcaattatctttttcctcatcttctttcctttctctcccaccatcaattcattgaccaatttctccacctcatctc 16686230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 20863989 - 20863814
Alignment:
Q  25 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttca 124  Q
    |||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||||| |||  | ||||||||||| || || ||||||     
T  20863989 gtcacttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttct 20863890  T
Q  125 tcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccac 200  Q
    ||||||  ||| || |||||| | ||||| || |||||||||||||||| |||| |||||| |||| | |||||||    
T  20863889 tcttcaactcatttgtcttttgcctcatcctccttcctttctctcccaccatcaattcatttaccagcatctccac 20863814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 1674226 - 1674374
Alignment:
Q  39 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 138  Q
    ||||||||||||||| || ||| |||||||||| |||||||||||||||||||||||||| ||||| ||||  || || |||||| |||||| ||| ||     
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatg 1674325  T
Q  139 atctttttcttcatcttctttcctttctctcccactatcagttcattga 187  Q
      ||||| | ||||||| ||||| ||||||||||| |||| ||||||||    
T  1674326 gccttttgcctcatcttttttccattctctcccaccatcaattcattga 1674374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 4557111 - 4557294
Alignment:
Q  25 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttca 124  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| || || ||||||     
T  4557111 gtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcg 4557210  T
Q  125 tcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacttcatctc 208  Q
    ||||||  |||||||||||||||  |||||||||||||||||| ||| | |||| |||||||||||| ||||| || |||||||    
T  4557211 tcttcatctcaattatctttttccacatcttctttcctttctccccctccatcaattcattgaccaaattctctacctcatctc 4557294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 4570958 - 4571138
Alignment:
Q  25 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttca 124  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||     
T  4570958 gtcacttaggtgtgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttct 4571057  T
Q  125 tcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacttcat 205  Q
    ||||||  || ||||| |||||| |||||||||||||||| |||||||| |||| |||||||||||| |||||||| ||||    
T  4571058 tcttcatctccattatatttttcctcatcttctttcctttatctcccaccatcaattcattgaccaaattctccacctcat 4571138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 4585628 - 4585797
Alignment:
Q  31 taggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttca 130  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| || || |||||| ||||||    
T  4585628 taggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttca 4585727  T
Q  131 gttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccac 200  Q
      || |||  ||||| | ||||||||||||| ||||||||||| |||| |||||||||||||||||||||    
T  4585728 actcgattgccttttgcctcatcttctttccattctctcccaccatcaattcattgaccaacttctccac 4585797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 200
Target Start/End: Original strand, 4480693 - 4480854
Alignment:
Q  39 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 138  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || || ||| || ||||||  || ||     
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatg 4480792  T
Q  139 atctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccac 200  Q
      ||||| ||||||||||||||||||||||||||| | || ||||||||  ||| |||||||    
T  4480793 gccttttgcttcatcttctttcctttctctcccaccaacaattcattgattaacctctccac 4480854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 4579418 - 4579593
Alignment:
Q  25 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttca 124  Q
    |||||||| ||| |||||||||| || || |||||| |||||||||| |||||||||||||||||||| || |||||||| ||||| || ||  |||||     
T  4579418 gtcacttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttct 4579517  T
Q  125 tcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccac 200  Q
    ||||||  ||||||  ||||| | ||||||||||| ||||||||||||| |||| |||||| |||| |||||||||    
T  4579518 tcttcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcattaaccagcttctccac 4579593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 34 - 208
Target Start/End: Complemental strand, 4613855 - 4613681
Alignment:
Q  34 gtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagtt 133  Q
    |||||||||||||| ||||  |||||  | |||||||| ||||||||||| ||||||||||| || ||||| ||||| || || |||||| ||||||  |    
T  4613855 gtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaact 4613756  T
Q  134 caattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacttcatctc 208  Q
    |||||  ||||| | |||| |||||||||||||||||||| |||| ||||||||||| |||||| || |||||||    
T  4613755 caattgccttttgcctcattttctttcctttctctcccaccatcaattcattgaccagcttctctacctcatctc 4613681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 39 - 200
Target Start/End: Original strand, 4516321 - 4516482
Alignment:
Q  39 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 138  Q
    ||||||||| ||||  |||||| |||||||||||||||||||||  |||||||||||||| ||||||||||| || || |||||| |||||| ||| ||     
T  4516321 attttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatg 4516420  T
Q  139 atctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccac 200  Q
      ||||| | |||||||||||||||| |||||||| || | |||||||| || |||||||||    
T  4516421 gccttttgcctcatcttctttcctttatctcccaccattaattcattgatcagcttctccac 4516482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 4504523 - 4504383
Alignment:
Q  45 tttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatcttt 144  Q
    ||||||||| || ||| |||||||||| ||||||||||||||||||||||||||| |||||||||| || || |||||| ||||||  || ||   ||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttt 4504424  T
Q  145 ttcttcatcttctttcctttctctcccactatcagttcatt 185  Q
    | | ||||||||||||||||||||||||| |||| ||||||    
T  4504423 tgcctcatcttctttcctttctctcccaccatcaattcatt 4504383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 187
Target Start/End: Original strand, 4592227 - 4592379
Alignment:
Q  35 tttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttc 134  Q
    ||||||||| ||||||||| |||||| | |||| ||| ||||||||||| ||||||||||| |||||||| ||||  || || |||||| ||||||  ||    
T  4592227 tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactc 4592326  T
Q  135 aattatctttttcttcatcttctttcctttctctcccactatcagttcattga 187  Q
     |||  ||||||| ||||||||||||||||||||||||| |||| ||||||||    
T  4592327 gattgcctttttcctcatcttctttcctttctctcccaccatcaattcattga 4592379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 4607037 - 4606958
Alignment:
Q  25 gtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtct 104  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||    
T  4607037 gtcacttaggtttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtct 4606958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 208
Target Start/End: Complemental strand, 4267295 - 4267129
Alignment:
Q  42 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatc 141  Q
    |||||||||||  |||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||  || || |||||| ||||||  || |  |      
T  4267295 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactccaagaca 4267196  T
Q  142 tttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacttcatctc 208  Q
    |||| ||||||| | ||||||||||||||||| |||| ||||||||| |||||||| || |||||||    
T  4267195 ttttgcttcatcatatttcctttctctcccaccatcaattcattgactaacttctcgacgtcatctc 4267129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 4598166 - 4598332
Alignment:
Q  34 gtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagtt 133  Q
    |||||||| |||||||| || |||||| |||||||||| || |||||||||||||||||||| ||| |||| || || || || |||||||||||||  |    
T  4598166 gtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaat 4598265  T
Q  134 caattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccac 200  Q
    ||||| |||||| | |||| ||||||||||| ||||||   |||| ||| ||||||| |||||||||    
T  4598266 caattgtcttttgcctcattttctttcctttatctcccgacatcaattcgttgaccagcttctccac 4598332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 4563708 - 4563842
Alignment:
Q  36 ttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttca 135  Q
    ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||  | ||| ||||||  |||    
T  4563708 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactca 4563807  T
Q  136 attatctttttcttcatcttctttcctttctctcc 170  Q
    |||  ||||| |  |||||||||||||||||||||    
T  4563808 attgccttttgccgcatcttctttcctttctctcc 4563842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 3171744 - 3171889
Alignment:
Q  42 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatc 141  Q
    |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||  |||||| || || || |||||| ||||||  || ||   |    
T  3171744 ttgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggcc 3171843  T
Q  142 tttttcttcatcttctttcctttctctcccactatcagttcattga 187  Q
     ||| | ||||||||||||||||||||||||| |||| ||| ||||    
T  3171844 ctttgcctcatcttctttcctttctctcccaccatcaattcgttga 3171889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 4560495 - 4560576
Alignment:
Q  28 acttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgt 109  Q
    ||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  4560495 acttatgtttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgt 4560576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 4505857 - 4506015
Alignment:
Q  39 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 138  Q
    ||||||||||||||| |||||| |||| ||||| |||||||||||| |||||||||||||||||||||| || || |  ||| || | ||||  || ||     
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatg 4505956  T
Q  139 atctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctc 197  Q
    | ||||||| ||||||| |||||||||||||| || || | ||||| ||||| ||||||    
T  4505957 acctttttcctcatcttgtttcctttctctccaaccataatttcatcgaccagcttctc 4506015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 4515253 - 4515104
Alignment:
Q  39 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 138  Q
    ||||||||||||||| |||||| | |||||||| |||||||||| ||||||| | || ||| |||| ||||| ||||| |||||| | ||||  || ||     
T  4515253 attttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccata 4515154  T
Q  139 atctttttcttcatcttctttcctttctctcccactatcagttcattgac 188  Q
    | ||||||| |||| || ||||||||||||||||| |||| |||||||||    
T  4515153 acctttttcctcattttatttcctttctctcccaccatcaattcattgac 4515104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 200
Target Start/End: Original strand, 4574305 - 4574469
Alignment:
Q  36 ttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttca 135  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||  ||||||||||||| |||||||| |||||  | ||  ||||| ||||||| |||    
T  4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctca 4574404  T
Q  136 attatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccac 200  Q
    ||    |||| | |||||||||||||||| |||||    |||| |||||||||||  ||||||||    
T  4574405 atggctttttgcctcatcttctttcctttatctccggacatcaattcattgaccagtttctccac 4574469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 4617022 - 4617170
Alignment:
Q  39 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 138  Q
    ||||||||||||||| || ||| |||| ||||| | |||||||||||||||||||||||| ||||| ||||  || || |||||| ||||||  || ||     
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg 4617121  T
Q  139 atctttttcttcatcttctttcctttctctcccactatcagttcattga 187  Q
      ||||| |||||| ||||||||||| |||||  |||||| ||||||||    
T  4617122 gccttttgcttcattttctttcctttatctccggctatcacttcattga 4617170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 4461123 - 4461290
Alignment:
Q  39 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 138  Q
    ||||||||||||||| || ||| |||| ||||| ||||||||| ||||||||  ||| |||||||| || || || ||  ||||| |||| | ||| ||     
T  4461123 attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatg 4461222  T
Q  139 atctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacttcatc 206  Q
    | ||||| | |||||||||||||  ||||||| || |||| ||| ||||||||||||||||| |||||    
T  4461223 accttttgcctcatcttctttccaatctctccaaccatcaattcgttgaccaacttctccacctcatc 4461290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 4492955 - 4493039
Alignment:
Q  39 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttc 123  Q
    ||||||||||||||| || ||| | |||||||| ||||||||||||||||||||||||||||||  |||||| || || ||||||    
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttc 4493039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 208
Target Start/End: Original strand, 4469809 - 4469972
Alignment:
Q  45 tttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatcttt 144  Q
    ||||||||| || ||| |||| ||||| ||||||||| ||||||||  ||| |||||||| || || || ||  ||||| |||| |  || || ||||||    
T  4469809 tttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttt 4469908  T
Q  145 ttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacttcatctc 208  Q
    | | ||||||||||||| |||||||| || |||| ||||||||| | ||||||||| |||||||    
T  4469909 tccctcatcttctttccattctctccaaccatcaattcattgactagcttctccacctcatctc 4469972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 4490481 - 4490339
Alignment:
Q  45 tttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatcttt 144  Q
    ||||||||  || ||| |||||||||| ||||||||||||||||||| ||||||  |||| ||||| ||  | |||||| ||||||  ||  |   ||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttt 4490382  T
Q  145 ttcttcatcttctttcctttctctcccactatcagttcattga 187  Q
    | | ||||||||||||||||||||||||| |||| ||||||||    
T  4490381 tgcctcatcttctttcctttctctcccaccatcaattcattga 4490339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 4392154 - 4392087
Alignment:
Q  43 tgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtc 110  Q
    ||||||||||| |||||| |||||| ||| |||||||||||| ||||| |||||||||||| ||||||    
T  4392154 tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtc 4392087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 4299869 - 4299813
Alignment:
Q  42 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 98  Q
    ||||||||||| ||||||| |||| ||||| |||||||||||||| |||||||||||    
T  4299869 ttgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacc 4299813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 4568076 - 4568124
Alignment:
Q  62 taatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtc 110  Q
    |||||||||| |||||||||||||||||| || ||||||||||||||||    
T  4568076 taatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtc 4568124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 4601789 - 4601848
Alignment:
Q  39 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 98  Q
    ||||||||||||||| |||||| |||| ||||| |||| |||| ||||||||||||||||    
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacc 4601848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 4622145 - 4622204
Alignment:
Q  42 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccagg 101  Q
    |||||||||||  |||||| |||| ||||| ||||||||  |||||||||||||||||||    
T  4622145 ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagg 4622204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 4457715 - 4457763
Alignment:
Q  160 cctttctctcccactatcagttcattgaccaacttctccacttcatctc 208  Q
    ||||| |||||||| |||| ||||||||| ||||||||||| |||||||    
T  4457715 cctttttctcccaccatcaattcattgactaacttctccacctcatctc 4457763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 208
Target Start/End: Original strand, 24103002 - 24103168
Alignment:
Q  42 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatc 141  Q
    |||||||||||  |||||| |||| ||||| |||||||||||||||||| ||||||||| ||||||||  || || |||||| |||| |  || |  | |    
T  24103002 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactccaagacc 24103101  T
Q  142 tttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacttcatctc 208  Q
    |||| ||||||| ||||||| ||||||||||| |||| ||||||||| |||||||| || |||||||    
T  24103102 ttttgcttcatcgtctttccgttctctcccaccatcaattcattgactaacttctcgacgtcatctc 24103168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 28000231 - 28000083
Alignment:
Q  39 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaatt 138  Q
    ||||||||||| ||| || ||| |||||||||| |||||||||||||||||||||||||| ||||| ||||  || || |||||  ||||||  || ||     
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatg 28000132  T
Q  139 atctttttcttcatcttctttcctttctctcccactatcagttcattga 187  Q
      ||||| | ||||||| ||||| ||||||||||| |||| ||||||||    
T  28000131 gccttttgcctcatcttttttccattctctcccaccatcaattcattga 28000083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 42 - 208
Target Start/End: Complemental strand, 3848 - 3682
Alignment:
Q  42 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgtcttcgtcggccttcatcttcagttcaattatc 141  Q
    ||||||||||||||||||| |||| ||||| |||| |||||||||||||| |||||| ||||| ||||  || || |||||| |||| |  || |    |    
T  3848 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggcc 3749  T
Q  142 tttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacttcatctc 208  Q
    |||| | |||||||||||||||||||||||||  ||| ||||||||| | ||||||||| |||||||    
T  3748 ttttgcctcatcttctttcctttctctcccaccgtcaattcattgactagcttctccacctcatctc 3682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 4815 - 4757
Alignment:
Q  42 ttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccag 100  Q
    |||||||||||  |||||| |||||||||| |||||||||||||||||||| |||||||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccag 4757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 1281114 - 1281184
Alignment:
Q  39 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtcttgtgt 109  Q
    ||||||||||||||| |  ||| |||||||||| || ||||||||||||||||||||||| ||||| ||||    
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgt 1281184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 3086426 - 3086479
Alignment:
Q  45 tttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccacc 98  Q
    ||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccacc 3086479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 3086530 - 3086578
Alignment:
Q  149 tcatcttctttcctttctctcccactatcagttcattgaccaacttctc 197  Q
    |||||||||||||||| |||||||| |||| |||||||| || ||||||    
T  3086530 tcatcttctttcctttatctcccaccatcaattcattgatcagcttctc 3086578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University