View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_20 (Length: 517)
Name: NF6076_high_20
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 32617990 - 32618216
Alignment:
| Q |
17 |
ctatttgtgatctaaatataatcatcttaaaattcaaaagagaatgcaaattaactttgaagatgcatatctggttggatatgaggatgttagagtatac |
116 |
Q |
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| T |
32617990 |
ctatttgtgatctaaatataatcatcttaaaattcaaaagagaatgcaaattaactttgaagattcatatctggttggatatgagggtgttagagtatac |
32618089 |
T |
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| Q |
117 |
gatcttagaaggaaggaaaagagaacttttaatcaaaacaaaagggaaaaaagaagtgtacgatattatattataaaactaaactaacatcaaaattttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32618090 |
gatcttagaaggaaggaaaagagaacttttaatcaaaacaaaagcgaaaa---aagtgtacgatattatattataaaactaaactaacatcaaaattttg |
32618186 |
T |
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| Q |
217 |
aggcatcttcattcacaaacaaattaaact |
246 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32618187 |
aggcatcttcattcacaaacaaattaaact |
32618216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 14604920 - 14604738
Alignment:
| Q |
21 |
ttgtgatctaaatataatcatcttaaaattcaaaagagaatgcaaattaactttgaagatgcatatctggttggatatgaggatgttagagtatacgatc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14604920 |
ttgtgatctaaatataatcatcttaaaattcaaaagagaatgcaaattaactttgaagatgcatatctggttggatatgagggtgttagagtatacgatc |
14604821 |
T |
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| Q |
121 |
ttagaaggaaggaaaagagaacttttaatcaaaacaaaagggaaaaaagaagtgtacgatattatattataaaactaaactaa |
203 |
Q |
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| T |
14604820 |
ttagaaggaatgaaaagagaaattttaatcaaaacaaaagggaaaaaagaagtgtacgatattatattataaaactaaactaa |
14604738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 336 - 513
Target Start/End: Complemental strand, 14604616 - 14604439
Alignment:
| Q |
336 |
aagctatagagagattaacaacgattataagtaagaaggttcataaccaaaaagatagaagaatgtatacagagaagaaataaaagagtaccaaagtggt |
435 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14604616 |
aagctatagagagattaacaacgattgtaagtaagaaggttcataaccaaaaagatagaagaatgtatacagagaagaaataaaagagtaccaaagtggt |
14604517 |
T |
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| Q |
436 |
ggaaatttgacaggaaagaaagagatcataaagtcatgtaaatacaattacaattgtagtacgtaagaataatttacc |
513 |
Q |
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| T |
14604516 |
ggaaatttgacaggaaagaaagagataataaagtcatgtacatacaattacaattgtaggaagtaagaatcatttacc |
14604439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 333 - 513
Target Start/End: Original strand, 32618303 - 32618483
Alignment:
| Q |
333 |
aagaagctatagagagattaacaacgattataagtaagaaggttcataaccaaaaagatagaagaatgtatacagagaagaaataaaagagtaccaaagt |
432 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32618303 |
aagaagctatagagagattaacaacgattgtaagtaagaaggttcataacaaaaaagatagaagagtgtatacagagaagaaataaaagagtaccaaagt |
32618402 |
T |
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| Q |
433 |
ggtggaaatttgacaggaaagaaagagatcataaagtcatgtaaatacaattacaattgtagtacgtaagaataatttacc |
513 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | |||||||| ||||||| |
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| T |
32618403 |
ggtggaaatttgacaggaaagaaagagataataaagtcatgtacatacaattacaattgtagaaagtaagaatgatttacc |
32618483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 246
Target Start/End: Complemental strand, 14604738 - 14604709
Alignment:
| Q |
217 |
aggcatcttcattcacaaacaaattaaact |
246 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
14604738 |
aggcatcttcattcacaaacaaattaaact |
14604709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 51270866 - 51271005
Alignment:
| Q |
104 |
tgttagagtatacgatctta--gaaggaaggaaaagagaacttttaatcaaaacaaaagggaaaaaagaagtgtacgatattatattataaaactaaact |
201 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| || ||||||||||||||| |
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| T |
51270866 |
tgttagagtatacgatcttatagaaggaaggaaaagagaactttgaatcaaaacaaaagggaaaaaataagtgtacg-----atgttataaaactaaact |
51270960 |
T |
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| Q |
202 |
aacatcaaaattttgaggcatcttcattcacaaacaaattaaact |
246 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51270961 |
aacatcaaaattttgaggcatcttcattcataaacaaattaaact |
51271005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 25897648 - 25897563
Alignment:
| Q |
340 |
tatagagagattaacaacgattataagtaagaaggttcataaccaaaaagatagaagaatgtatacagagaagaaataaaagagta |
425 |
Q |
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||||||||||||| |||| ||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25897648 |
tatagagagattagcaacaattttaagtaagaagcttcataaccaaagagatagaagaatgtatacagagaagaaataaaagagta |
25897563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 22774461 - 22774498
Alignment:
| Q |
209 |
aaattttgaggcatcttcattcacaaacaaattaaact |
246 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
22774461 |
aaattttgaggcatcttcattcataaacaaattaaact |
22774498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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