View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_23 (Length: 490)
Name: NF6076_high_23
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 484
Target Start/End: Original strand, 30757214 - 30757685
Alignment:
| Q |
13 |
aattgtatatgtgacatcggacaaagcaaaatgaaaagaagtgtttgatttagggttccacgcaatctgagccagtgtagtggacacttttgccgagttt |
112 |
Q |
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| T |
30757214 |
aattgtatatgtgacaccggacaaagcaaaatgaaaataagtgtttgatttagggttccacgcaatctgagccagtgtagtggacacttgtgccgagttt |
30757313 |
T |
|
| Q |
113 |
ttctgctataacagtataagcaacttgttcggcatttttaacttgagaatcattattaaaaaccttatctgcattaagaagtgtgggggttagaagtaac |
212 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30757314 |
ttatgctataacagtataagcaacttgttcggcatttttaacttgagaatcattattaacaaccttatctgcattaagaagtgtgggggttagaagtaac |
30757413 |
T |
|
| Q |
213 |
agggggttcagcatgacttgttggatgatcattagcaacaatgagctcttcggtattaatcagctcaccatgaagcttttcctgaatatttgaagtgtca |
312 |
Q |
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|||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757414 |
agggggttcaacatgacttgttggatgatcattagtaacgatgagctcttcggtattaatcagctcaccatgaagcttttcctgaatatttgaagtgtca |
30757513 |
T |
|
| Q |
313 |
tcagtaccgaatgaaattgtggcagggatatgctcttcattcacaatggcaataaccgccttattagtaattggtgctgcaaaagctttagaagaaccta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30757514 |
tcagtaccgaatgaaattgtggcagggatatgctcttcattcacaatggcaataaccgccttattagtaattggcgctgcaaaagctttagaagaaccta |
30757613 |
T |
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| Q |
413 |
taccatcaggatctttcttttcaacatatttcagagtcatttgcttccgagcatgtgtaggtttcttctcac |
484 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757614 |
taccatcatgatcgttcttttcaacatatttcagagtcatttgcttccgagcatgtgtaggtttcttctcac |
30757685 |
T |
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