View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_28 (Length: 475)
Name: NF6076_high_28
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 2113370 - 2113828
Alignment:
| Q |
1 |
aggaggctcggatttgaatccaaaaacaagaaaagctgattcccataaatgatccgagattgcatgtttgttcatttttcttactccttgaattgcagcc |
100 |
Q |
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| T |
2113370 |
aggaggctcggatttgaatccaaaaacaagaaaagctgattcccataaatgatccgagattgcatggttgttcatttttcttactccttgaattgcagcc |
2113469 |
T |
|
| Q |
101 |
tttgcgaatttcaaaccacctgttctcttagcaaatgtttgtgtaatggaatggaaatgaagccaacatccatcatcatgtagattagtccttttcgcta |
200 |
Q |
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| T |
2113470 |
tttgcgaatttcaaaccacctgttctcttagaaaatgtttgtgtaatggaatggaaatgaagccaacatccatcatcatgtagattagtccttttcgcta |
2113569 |
T |
|
| Q |
201 |
gtccaaacctcataagaagcgcagccgaatcttcttcgtctttccacgtccgcgacgttacaaaacaactcgatgttaggctcatacagtttgtccactt |
300 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2113570 |
gtccaaacctcacaagaagcgcggccgaatcttcttcgtctttccacgtccgcgacgttacaaaacaactcgatgttaggctcatacagtttgtccactt |
2113669 |
T |
|
| Q |
301 |
cttgagatgattttcatttgttgataaactctttgctgcattggctaacaaatttgctgaaactggagcaggagaaaaccaaccaccgacaagaagcatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2113670 |
cttgagatgattttcatttgttgataaactctttgctgcattggctaacaaatttgctgaaactggagcaggagaaaaccaaccaccgacaagaagcatt |
2113769 |
T |
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| Q |
401 |
cttatagcaagaaaattccctttttctttagttttctccaaagtttctaaacaaaaaag |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2113770 |
cttatagcaagaaaattccctttttctttagttttctccaaagtttctaaacaaaaaag |
2113828 |
T |
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