View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_30 (Length: 466)
Name: NF6076_high_30
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 31715199 - 31714964
Alignment:
| Q |
19 |
ctgtagaaaacatagagcaaaggatgaagaaaatcagatgaattcatgagaagctctacattgttttatttaactcctttggaggaatgtaagtaaacat |
118 |
Q |
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| T |
31715199 |
ctgtacaaaacatagagcaaaggatgaagaaaatctgatgatttcatgagaagctctacattgttttatttaactcctttggaggaatgtaagtaaacat |
31715100 |
T |
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| Q |
119 |
gtttgtccaccaaagccatctttcgc----------gtaccgcctttcaacaacaacatctgcccattggatttcaaagtctaacacacattggtgtgct |
208 |
Q |
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| T |
31715099 |
gtttgtccaccaaagccatctttcgcacacatgtttgtaccgcctttcaacaacaacgtctgcccattggatttcaaagtctaa-----------gtgct |
31715011 |
T |
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| Q |
209 |
tttgtaattgataataagactcttcacatttcttgcttgattaagag |
255 |
Q |
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| T |
31715010 |
tttgtaattgataataagactcttcacatttcttgcttgattaagag |
31714964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 312 - 455
Target Start/End: Complemental strand, 31714907 - 31714769
Alignment:
| Q |
312 |
caggtgtttgatggggaagattaatgctatttctgaatctgaaatatgaataatgaaatagaataccttttaagatataagtgtaacttcatctctaact |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |
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| T |
31714907 |
caggtgtttgatggggaagattaatgctatttctgaatctgaaatatgaataatgaaatagaatacc-tttaagatataagtgtaactttatct----ct |
31714813 |
T |
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| Q |
412 |
aacataaggggtagctatgcttggtgctgcataatccggcttca |
455 |
Q |
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| T |
31714812 |
aacataaggggtagctatgcttggtgctgcataatccggcttca |
31714769 |
T |
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