View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_32 (Length: 454)
Name: NF6076_high_32
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 148 - 411
Target Start/End: Complemental strand, 17725170 - 17724902
Alignment:
| Q |
148 |
aatggcgtagtactcttcaaaatatcatga-----aataacagtgtgcataccatctatgagatgaaatgagtaagtaagttgcactcaattgtaacatg |
242 |
Q |
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| T |
17725170 |
aatggcgtagtactcttcaaaatatcataattgacaataacagtgtgcatactatctatgagattaaatgagtaagtaagttgcactcaattctaacatg |
17725071 |
T |
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| Q |
243 |
atttcatccaactgccacattcccaacataaataaaggttggtgaggtctccaaaataattatactgtgataaattttatttccaaacatatttcgcaat |
342 |
Q |
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| T |
17725070 |
atttcttccaactgccacattcccaacataaataaaggttggtgaggtctccaaaataattatactgtgataaattttatttccaaacatatttcgcaat |
17724971 |
T |
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| Q |
343 |
acgtatttggagtagtaatggcttagctaatgcacgtatataatactccatttgtctcataataactga |
411 |
Q |
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| T |
17724970 |
acgtatttggagtagtaatggcttagctgatgcacgtatataatactccatctgtctcataataactga |
17724902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 17725483 - 17725377
Alignment:
| Q |
18 |
gtattttcagcataagtttattggtttagcctttgttggtctatttatggcatgatgcttcagtgctgacaattaacaatgtaatgaagtatcagttttg |
117 |
Q |
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| T |
17725483 |
gtattttcagcataagtttattggtttagcctttgttggtctatttatggcatgatgcttcagtgatgacaattaacaatgtaatgaagtatcagttttg |
17725384 |
T |
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| Q |
118 |
attttaa |
124 |
Q |
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| T |
17725383 |
attttaa |
17725377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 42995267 - 42995173
Alignment:
| Q |
30 |
taagtttattggtttagcctttgttggtctatttatggcatgatgcttcagtgctgacaattaacaatgtaatgaagtatcagttttgattttaa |
124 |
Q |
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||||||| |||||||||| |||| ||||||||| |||||||||||||||| || |||||| ||||||||||||||||| |||||||||||||||| |
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| T |
42995267 |
taagttttttggtttagcttttgctggtctattaatggcatgatgcttcactgatgacaaataacaatgtaatgaagtgtcagttttgattttaa |
42995173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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