View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_34 (Length: 445)
Name: NF6076_high_34
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 41696905 - 41697234
Alignment:
| Q |
1 |
acattaaaagaatcaactaaatttaattaacaacaataaaaactaaataagcatcacttatagcttctttcccaactatatatgtttgttgatcagcaag |
100 |
Q |
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| T |
41696905 |
acattaaaagaatcaactaaatttaattaacaacaataaaaactaaataagcatcacttatagcttctttcccaactatatatgtttgttgatcagcaag |
41697004 |
T |
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| Q |
101 |
aacaacaatccttatcttgcacccttcaataatcatctactaaacttaattatagcacaactttatgctatttacattaagaattt-aaatttaaatgaa |
199 |
Q |
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| T |
41697005 |
aacaacaatccttatcttgcacccttcaataatcatctactaaacttaattatagcacaattttatgctatttacattaagaatttaaaatttaaatgaa |
41697104 |
T |
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| Q |
200 |
taacttgctttcaagttttaatccaaacaaaaccaaatcattattcttctgtaacccaagttctgcttcttcttcttgagcttctactaaacaacgaacc |
299 |
Q |
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| T |
41697105 |
taacttgctttcaagttttaatccaaacaaaaccaaatcattattcttctgtaacccaagttctgcttcttcttcttgagcttctacgaaacaacgaacc |
41697204 |
T |
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| Q |
300 |
agaaaagctacgatttaaattaacattccc |
329 |
Q |
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| T |
41697205 |
agaaaagctacgatttaaattaacattccc |
41697234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 41697261 - 41697332
Alignment:
| Q |
356 |
ttctccgaattccacgtctctctctaactctattacttcccacagtcaaagaaattcttctagaatcttcgt |
427 |
Q |
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| T |
41697261 |
ttctcctaattccacgtctctctctaactctattacttcccacagtcaaagaaattcttctagaatcttcgt |
41697332 |
T |
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