View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_35 (Length: 439)

Name: NF6076_high_35
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_35
NF6076_high_35
[»] chr6 (6 HSPs)
chr6 (1-251)||(17872920-17873174)
chr6 (44-251)||(17862372-17862588)
chr6 (322-431)||(17862659-17862768)
chr6 (348-431)||(17874477-17874560)
chr6 (204-251)||(17875056-17875103)
chr6 (321-353)||(17873243-17873275)
[»] chr5 (2 HSPs)
chr5 (322-424)||(25962167-25962269)
chr5 (322-371)||(12524428-12524477)
[»] chr1 (1 HSPs)
chr1 (350-427)||(2350867-2350944)
[»] chr3 (1 HSPs)
chr3 (325-385)||(47587140-47587200)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 17872920 - 17873174
Alignment:
Q  1 atagaatttgaagatgaaaagagtgtatatgagatgaggttgggaagtgaagatgagaggtttctacaattcaatatatagatactaactagtc------ 94  Q
    ||||||||||||||||||||||||  ||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||          
T  17872920 atagaatttgaagatgaaaagagt--atatgagatgaagttgtgaagtgaagatgagaggtttgtacaatgcaatatatagatactaactagtcaactga 17873017  T
Q  95 ----aagaaaagtagtgtggtccaatttaataattaaacgcggtaatagtatggtggggggtgttggttctttgtatcttcctcttggccccacacaaat 190  Q
        |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||   |    
T  17873018 agtcaagaaaagtagtgtggtccactttaataattaaacgcggtaatagtatggtggggggtg-aggttctttgtatcttcatcttggccccacac---t 17873113  T
Q  191 gcttccaagaaagtgagacaatttatttatttatttttaaataaatgatattattcattca 251  Q
     |||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  17873114 ccttccaagaaagtgagacaattaattaattaatttttaaataaatgatattattcattca 17873174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 44 - 251
Target Start/End: Original strand, 17862372 - 17862588
Alignment:
Q  44 gaagtgaagatgagaggtttctacaattcaatatatagatactaactagtcaa----------gaaaagtagtgtggtccaatttaataattaaacgcgg 133  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||          |||||||||||||||||| ||||||||||||||||||    
T  17862372 gaagtgaagatgagaggtttgtacaatgcaatatatagatactaactagtcaactgaagtcaagaaaagtagtgtggtccactttaataattaaacgcgg 17862471  T
Q  134 taatagtatggtggggggtgttggttctttgtatcttcctcttggccccacacaaatgcttccaagaaagtgagacaatttatttatttatttttaaata 233  Q
    |||||||||||||| |||||| |||||||||||||||| |  ||||| ||||||| | |||||||||||||||||||||| |||||||||||||||||||    
T  17862472 taatagtatggtggagggtgt-ggttctttgtatcttcattatggcctcacacaattccttccaagaaagtgagacaattaatttatttatttttaaata 17862570  T
Q  234 aatgatattattcattca 251  Q
    |||||||||||| |||||    
T  17862571 aatgatattatttattca 17862588  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 322 - 431
Target Start/End: Original strand, 17862659 - 17862768
Alignment:
Q  322 caacattcatgtcaatagcatatattaacaaagtataaaagcctacaaatttgactatctttaaatttatggaatatctatgtcttcagatttacaacgt 421  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||| |||||    
T  17862659 caacaatcatgtcaataacatatatttacaaagtataaaagcctacaaatttgactatatttatatttatggaatatctatgtctctagatttataacgt 17862758  T
Q  422 tgatgatgtc 431  Q
    |||| |||||    
T  17862759 tgattatgtc 17862768  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 348 - 431
Target Start/End: Original strand, 17874477 - 17874560
Alignment:
Q  348 aacaaagtataaaagcctacaaatttgactatctttaaatttatggaatatctatgtcttcagatttacaacgttgatgatgtc 431  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  17874477 aacaaagtataaaagcctacaaatttgactatatttaaatttatagaatatctatgtctccagatttacaacgttgatgatgtc 17874560  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 17875056 - 17875103
Alignment:
Q  204 tgagacaatttatttatttatttttaaataaatgatattattcattca 251  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  17875056 tgagacaattaatttatttatttttaaataaatgatattattcattca 17875103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 17873243 - 17873275
Alignment:
Q  321 gcaacattcatgtcaatagcatatattaacaaa 353  Q
    |||||||||||||||||||||||||||||||||    
T  17873243 gcaacattcatgtcaatagcatatattaacaaa 17873275  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 424
Target Start/End: Complemental strand, 25962269 - 25962167
Alignment:
Q  322 caacattcatgtcaatagcatatattaacaaagtataaaagcctacaaatttgactatctttaaatttatggaatatctatgtcttcagatttacaacgt 421  Q
    |||||||||||| ||||||||| |   |||||||||  | |||||||||| ||||||| || || |||  |||||||| |||||| | ||| ||||||||    
T  25962269 caacattcatgttaatagcataaaacgacaaagtatctatgcctacaaatatgactatattcaagtttccggaatatccatgtctccggatctacaacgt 25962170  T
Q  422 tga 424  Q
    |||    
T  25962169 tga 25962167  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 12524428 - 12524477
Alignment:
Q  322 caacattcatgtcaatagcatatattaacaaagtataaaagcctacaaat 371  Q
    |||||||||||| ||||||||| | | |||||||| ||||||||||||||    
T  12524428 caacattcatgttaatagcataaaatgacaaagtacaaaagcctacaaat 12524477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 2350944 - 2350867
Alignment:
Q  350 caaagtataaaagcctacaaatttgactatctttaaatttatggaatatctatgtcttcagatttacaacgttgatga 427  Q
    ||||||| |||||||||||||| ||||||| || |||| |  |||||| ||||| |||| ||| | ||||||||||||    
T  2350944 caaagtacaaaagcctacaaatatgactatattaaaatctccggaatagctatgccttcggatctgcaacgttgatga 2350867  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 47587140 - 47587200
Alignment:
Q  325 cattcatgtcaatagcatatattaacaaagtataaaagcctacaaatttgactatctttaa 385  Q
    ||||||||| ||||||||| |   ||| ||||||||||||||||||| ||||||| |||||    
T  47587140 cattcatgttaatagcataaaacgacagagtataaaagcctacaaatatgactatttttaa 47587200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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