View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6076_high_41 (Length: 420)
Name: NF6076_high_41
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_41 |
 | |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 403
Target Start/End: Complemental strand, 48966752 - 48966324
Alignment:
| Q |
4 |
ccacagttcaatcattgaaattaaacacttggccaatattgtcaaaattttaaagagaaaaagaaaaatacgtggtggcttgtcgaatgttggatgaatc |
103 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48966752 |
ccacagttcaatcattgaaattaaatacttggccaatattgtcaaaattttaaagagaaaaagaaaaatacgtggtggcttgtcgaatgttggatgaatc |
48966653 |
T |
|
| Q |
104 |
atgaatccaataattgtaaacgtgacttcaccaaccata------cctaacagagtataattgttttgcc---------------tgaaatcaaagaaaa |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||||| ||||||||||||||| |
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|
| T |
48966652 |
atgaatccaataattgtaaacgtgacttcaccaaccataaccatacccaacagagtataaattttttgccctcacttttcttttctgaaatcaaagaaaa |
48966553 |
T |
|
| Q |
183 |
caaatcttactcttcttctatctatcta--------gcagtgatcaatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatcta |
274 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48966552 |
caaatcttactcttcttctatctatctatctatctagcagtgatcaatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatcta |
48966453 |
T |
|
| Q |
275 |
gcaccaggccatatgatccctatgtgtgacatagcaactctctttgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcc |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48966452 |
gcaccaggccatatgatccctatgtgtgacatagcaactatctttgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcc |
48966353 |
T |
|
| Q |
375 |
tttccaaatctcttccctccatagatcct |
403 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
48966352 |
tttccaaatctcttccctccatagatcct |
48966324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 219 - 387
Target Start/End: Complemental strand, 48959320 - 48959152
Alignment:
| Q |
219 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
318 |
Q |
| |
|
||||||||||||||||| || | |||| |||||||||||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||| || |
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|
| T |
48959320 |
caatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctgtt |
48959221 |
T |
|
| Q |
319 |
tgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctct |
387 |
Q |
| |
|
|||||| |||||||||||||| || |||||||| |||||||| ||| || ||||| || |||||||||| |
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|
| T |
48959220 |
tgcatcccatggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaaatctct |
48959152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 220 - 373
Target Start/End: Complemental strand, 48963461 - 48963308
Alignment:
| Q |
220 |
aatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctcttt |
319 |
Q |
| |
|
|||||| || |||||| || |||||||| ||||||||||||||||||||||||| ||||| || |||||||| ||| || ||||||||||| |||| ||| |
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|
| T |
48963461 |
aatggagggcgttgaagttgaacgaccattgaaacttcacttcattccatatcttgcacctggtcatatgattcctttgggtgacatagcagctctgttt |
48963362 |
T |
|
| Q |
320 |
gcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttc |
373 |
Q |
| |
|
|| || | ||||||||||||||| |||||||| |||||||| |||||| ||||| |
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|
| T |
48963361 |
gcgtcccgtggccaacaagtcacaatcatcaccactccctccaacgcccacttc |
48963308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 321
Target Start/End: Complemental strand, 48952355 - 48952278
Alignment:
| Q |
244 |
accactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctttgc |
321 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||| |||| || ||||||||| | ||||||||||| |||||||||| |
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|
| T |
48952355 |
accactcaaactttacttcattccatacttagcagcagggcacatgatccctttatgtgacatagcttctctctttgc |
48952278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 48911426 - 48911474
Alignment:
| Q |
273 |
tagcaccaggccatatgatccctatgtgtgacatagcaactctctttgc |
321 |
Q |
| |
|
||||||| ||||| ||||||||| | || |||||||||||||||||||| |
|
|
| T |
48911426 |
tagcacctggccacatgatccctctatgcgacatagcaactctctttgc |
48911474 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 219 - 366
Target Start/End: Complemental strand, 13441379 - 13441232
Alignment:
| Q |
219 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
318 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| | || |||||||||||| | ||||||||||||||| | || |
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|
| T |
13441379 |
caatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaactatgtt |
13441280 |
T |
|
| Q |
319 |
tgcatctcatggccaacaagtcaccatcatcacaactccctctaacgc |
366 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||| |||||||| ||||| |
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|
| T |
13441279 |
tgcatcccgtggccaacaagtcacaatcatcaccactccctccaacgc |
13441232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 387
Target Start/End: Complemental strand, 13462563 - 13462395
Alignment:
| Q |
219 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
318 |
Q |
| |
|
||||||||||||| ||| || ||| |||||||||||| ||||||||||||||||||||| | || |||||||||||| | | ||||||||||| | | || |
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|
| T |
13462563 |
caatggaaggtgtagaagttgaacaaccactgaaactgcacttcattccatatctagcatctggacatatgatccctctttttgacatagcaattatgtt |
13462464 |
T |
|
| Q |
319 |
tgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctct |
387 |
Q |
| |
|
|||||| | ||||||||| ||||| ||||||| |||||||| |||| | | | |||| |||||||||| |
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|
| T |
13462463 |
tgcatcccgtggccaacacgtcacagtcatcaccactccctccaacgtccaatcccttaccaaatctct |
13462395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 387
Target Start/End: Complemental strand, 13449542 - 13449374
Alignment:
| Q |
219 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
318 |
Q |
| |
|
||||||||||||||||| || ||| |||| ||||| || |||||||||||| ||| ||| | || |||||||||||| | | ||||||||||||| | || |
|
|
| T |
13449542 |
caatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttcttgcatctggacatatgatccctctttttgacatagcaactatgtt |
13449443 |
T |
|
| Q |
319 |
tgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctct |
387 |
Q |
| |
|
|||||| | |||||| ||||| || ||||||| |||||| | ||||| || | |||| |||||||||| |
|
|
| T |
13449442 |
tgcatcccgtggccagcaagtaacagtcatcaccactcccgccaacgcaaaatcccttaccaaatctct |
13449374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 220 - 360
Target Start/End: Complemental strand, 12541851 - 12541711
Alignment:
| Q |
220 |
aatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctcttt |
319 |
Q |
| |
|
|||||||||||||||| || | |||||| | ||| ||||||||||||||||| ||||| | || |||||||||||| | ||||| ||||||||| | ||| |
|
|
| T |
12541851 |
aatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgttt |
12541752 |
T |
|
| Q |
320 |
gcatctcatggccaacaagtcaccatcatcacaactccctc |
360 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
12541751 |
gcatcacatggccaacaagtcacaatcatcaccactccctc |
12541711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 360
Target Start/End: Complemental strand, 28386499 - 28386366
Alignment:
| Q |
227 |
ggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctttgcatctc |
326 |
Q |
| |
|
||||||||| || || ||||| ||||||||||||||||||| |||| |||| | || |||||||| || | ||||| ||||||||| | |||||||| | |
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|
| T |
28386499 |
ggtgttgaagttgaaagaccattgaaacttcacttcattccgtatccagcatctggacatatgatgccactttgtgatatagcaactttgtttgcatcac |
28386400 |
T |
|
| Q |
327 |
atggccaacaagtcaccatcatcacaactccctc |
360 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||| |
|
|
| T |
28386399 |
gtggccaacatgtcacaatcatcaccactccctc |
28386366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 12482461 - 12482599
Alignment:
| Q |
219 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
318 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||||||| || |||||| || ||||||||||||||||| | || |||||||| || |
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|
| T |
12482461 |
caatggaaggtgttgaagttgaacgaccattgaaacttcacttcattccatttccagcacctgggcatatgatccctatgtgcaagattgcaactctgtt |
12482560 |
T |
|
| Q |
319 |
tgcatctcatggccaacaagtcaccatcatcacaactcc |
357 |
Q |
| |
|
|||||| | |||||| || ||||| |||||||| ||||| |
|
|
| T |
12482561 |
tgcatcacgtggccatcatgtcacaatcatcaccactcc |
12482599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 12589193 - 12589333
Alignment:
| Q |
219 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
318 |
Q |
| |
|
||||| |||| ||||||||| ||| |||| | |||||||||||||||||||||||| |||| || |||||||||||| | |||||||| ||||| || || |
|
|
| T |
12589193 |
caatgaaaggcgttgaaattgaacaaccattaaaacttcacttcattccatatctatcacctgggcatatgatccctctatgtgacattgcaaccctgtt |
12589292 |
T |
|
| Q |
319 |
tgcatctcatggccaacaagtcaccatcatcacaactccct |
359 |
Q |
| |
|
|||||| | ||||||||||||||| |||| ||| ||||||| |
|
|
| T |
12589293 |
tgcatcccgtggccaacaagtcacaatcaccaccactccct |
12589333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 219 - 388
Target Start/End: Original strand, 3416536 - 3416705
Alignment:
| Q |
219 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
318 |
Q |
| |
|
|||||| |||||||||| | |||||||||||||| ||||||||||||| ||||| ||| | |||||||||||||| | | ||| |||||| || | || |
|
|
| T |
3416536 |
caatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatcttgcatctagccatatgatccctctttctgatatagcagctatgtt |
3416635 |
T |
|
| Q |
319 |
tgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctctt |
388 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| |||||||| || ||||| || ||| | ||||||||| |
|
|
| T |
3416636 |
tgcatcccatggccaacatgtcacaatcatcaccactccctccaatgccaaatttcttacaaaatctctt |
3416705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 387
Target Start/End: Original strand, 12640495 - 12640655
Alignment:
| Q |
227 |
ggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctttgcatctc |
326 |
Q |
| |
|
||||||| | || |||| ||| ||||||||| | | |||||| ||||||||| || |||||||| ||| || ||||||||||| || | |||||||| | |
|
|
| T |
12640495 |
ggtgttggagttgaacggccattgaaacttctcatacttccatttctagcacctggtcatatgattcctttgggtgacatagcagctttgtttgcatccc |
12640594 |
T |
|
| Q |
327 |
atggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctct |
387 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| |||||| | ||| || |||||||||| |
|
|
| T |
12640595 |
atggccaacaagtcacgatcatcaccactccctccaacgcccatttctttaccaaatctct |
12640655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 523 - 600
Alignment:
| Q |
244 |
accactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctttgc |
321 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| |||| || ||||||||| | |||||||| || |||||||||| |
|
|
| T |
523 |
accactcaaactttacttcattccatatctagcagcaggtcacatgatccctctttgtgacattgcctctctctttgc |
600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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