View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_44 (Length: 414)
Name: NF6076_high_44
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 16438966 - 16438581
Alignment:
| Q |
16 |
atgtttaggggttggtagtgaaagatttgcagcacacgatgtttcattcggtcaactatcctagtactgctatcgcatataaacacacaactgcgaagtt |
115 |
Q |
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| T |
16438966 |
atgtttaggggttggtagtgaaagatttgcagcacacgatgtttcattcggtcaactatcctagtactgctatcgcatatgaacacacaactgcgaagtt |
16438867 |
T |
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| Q |
116 |
ctattgggatgatatgccttcgttctggtaaacatgatt-----gcagatacaaaaaagtgtaggatgatgataaatatctataaatctgaatccatcaa |
210 |
Q |
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| T |
16438866 |
ctattgggatgatataccttcgttctggtaaacatgattatattgcagatacaaaaaagtgtaggatgatgataaatatctataaatctgaatccatcaa |
16438767 |
T |
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| Q |
211 |
taaaatctacagataattataaattatagcaatataacaaaagattcaacatgctctgccgattaattacggattcattagctgcaaagtacctgattac |
310 |
Q |
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| T |
16438766 |
taaaatctacagataattataaattatagcaatttaaccaaagattcaacatgctctgccgattaattacggattcattagctgcaaagtacctgattac |
16438667 |
T |
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| Q |
311 |
ggctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaactggttggagctgaggtgtata |
396 |
Q |
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| T |
16438666 |
ggctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaactggttggagctgaggtgtata |
16438581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 16416181 - 16416242
Alignment:
| Q |
313 |
ctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaa |
374 |
Q |
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| T |
16416181 |
ctggcaggtcttctggtttagggggaataggagccatgttgcaaaggaaagaatctttccaa |
16416242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 16427080 - 16427158
Alignment:
| Q |
296 |
aaagtacctgattacggctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaa |
374 |
Q |
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| T |
16427080 |
aaagtacctgcatacagctggaaggtcttctggtttggggggattaggagccctgttacaaaggaaggtatctttccaa |
16427158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 16442690 - 16442752
Alignment:
| Q |
312 |
gctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaa |
374 |
Q |
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| T |
16442690 |
gctggaaggtcttctggtttagggggattaggagccaagttacaaaggaaggtatctttccaa |
16442752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 16499812 - 16499759
Alignment:
| Q |
321 |
tcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaa |
374 |
Q |
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|||||||||||||| |||||||||| ||||||| | | ||||| |||||||||| |
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| T |
16499812 |
tcttctggtttagggggattaggagacatgttgtagaggaaagaatctttccaa |
16499759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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