View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_47 (Length: 405)
Name: NF6076_high_47
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 23754860 - 23755234
Alignment:
| Q |
16 |
atactattcctttatctcatctcaagtaaatatcatcacatcgcatttgatgtgagatttaacatgagccagagtgagtaggtttcagttttgttgccat |
115 |
Q |
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| T |
23754860 |
atactattcctttatctcatctcaagtaaatacaatcacatcacatttgatgtgagatttaacatgagacagagtgagtaggtttcagttttgttgccat |
23754959 |
T |
|
| Q |
116 |
cccaatccttgcattcagtgggtgagaagaaaataatgaaatatacatatgatcatcagagaaaacgatatgacgatgaaatgcaaccccacaatcataa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23754960 |
cccaatccttgcattcagtgggtgagaagaaaataatgaaatatacatatgatcatcagagaaaacgatatgacgatgaaatgcaaccccacaatcataa |
23755059 |
T |
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| Q |
216 |
caattataag--nnnnnnnncagacccaccatttgaaaatttatgagtgctaattagtaatagtatgacttgaggtgaaaattctagaagtgaattatgg |
313 |
Q |
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|||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23755060 |
caattataagaaaaaaaaaacagacccaccatttgaaaatttatgaatgataattagtaatagtatgacttgaggtgaaaattctagaagtgaattatgg |
23755159 |
T |
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| Q |
314 |
ttagtcaaaaatgtacctgaactgttgagtcatatatttgcttttcaatattttcacaagaatagggaaactttg |
388 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23755160 |
ttagtcaaaagtgtacctgacctgttgagtcatatatttgcttttcaatattttcacaagaatagggaaactttg |
23755234 |
T |
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