View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_51 (Length: 396)

Name: NF6076_high_51
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_51
NF6076_high_51
[»] chr3 (11 HSPs)
chr3 (1-286)||(36811101-36811386)
chr3 (4-281)||(27005849-27006126)
chr3 (11-268)||(36875335-36875595)
chr3 (5-246)||(37587632-37587873)
chr3 (277-387)||(33396557-33396667)
chr3 (5-193)||(37580898-37581086)
chr3 (8-138)||(33714936-33715066)
chr3 (2-204)||(37582293-37582495)
chr3 (1-194)||(33709048-33709241)
chr3 (48-198)||(51113902-51114052)
chr3 (71-185)||(33094071-33094185)
[»] chr7 (1 HSPs)
chr7 (5-266)||(18724434-18724692)
[»] chr4 (6 HSPs)
chr4 (165-201)||(55505343-55505379)
chr4 (35-122)||(1528311-1528398)
chr4 (35-122)||(12120250-12120337)
chr4 (162-196)||(1508238-1508272)
chr4 (49-195)||(6006158-6006304)
chr4 (58-139)||(1513535-1513616)
[»] chr1 (1 HSPs)
chr1 (165-206)||(43634017-43634058)
[»] chr6 (1 HSPs)
chr6 (57-121)||(14820598-14820662)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 36811101 - 36811386
Alignment:
Q  1 tgcaatctcaaagatttgccctaggcttctaaaacttgacctggaacattgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcata 100  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||||     
T  36811101 tgcaatctcaaagatttgccctcggcttctacaacttgacctggaacattgttattatgtcacagagaagggagtccggcaagtggtagaaaactgcatt 36811200  T
Q  101 cacctgagagagattaatttgcgatcttgtcctaaagtgtccactaaaattgtttcctggatgatattttcaaggccatcattgagaaaaataacagcgc 200  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||  |||||||||||||||||||||||||||||||||||| |||| || | || |    
T  36811201 cacctgagagagattaatttgcgatcttgtcgtaaagtgtctactaatgttgtttcctggatgatattttcaaggccatcattgaaaaaagtagcggctc 36811300  T
Q  201 cgcctcaatttcgtccccatgactgtgataggaaactcctctttgggccatgtcttgtttgctagttattctagaagtgctctgtt 286  Q
    | ||||| || ||||||| ||||  ||||||||||| ||||||| ||  |||||||||||||||||||||||||||||||||||||    
T  36811301 cacctcatttccgtccccgtgacaatgataggaaacccctctttaggagatgtcttgtttgctagttattctagaagtgctctgtt 36811386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 4 - 281
Target Start/End: Original strand, 27005849 - 27006126
Alignment:
Q  4 aatctcaaagatttgccctaggcttctaaaacttgacctggaacattgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcatacac 103  Q
    |||||||||||||| |||  | |||||  |||||||||||||||||||| ||| |||||||||||| || || ||||| ||||||||||| |||| | ||    
T  27005849 aatctcaaagattttcccctgccttcttcaacttgacctggaacattgtcatcttgtcacagagaaaggggttaggctagtggtagaaaaatgcacatac 27005948  T
Q  104 ctgagagagattaatttgcgatcttgtcctaaagtgtccactaaaattgtttcctggatgatattttcaaggccatcattgagaaaaataacagcgccgc 203  Q
    || |||||||||||| || ||||||||| || ||| ||  ||||  || ||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  27005949 ctaagagagattaatctgggatcttgtcgtagagtttctgctaatgttatttcctggatgatattttcaaggccatcactgagaaaaattacagctccgc 27006048  T
Q  204 ctcaatttcgtccccatgactgtgataggaaactcctctttgggccatgtcttgtttgctagttattctagaagtgct 281  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  27006049 ctcattttcgtccccgtgactgtgataggaaactcctctctgggcgatgtcttgtttgctagttattctagaagtgct 27006126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 36875595 - 36875335
Alignment:
Q  11 aagatttgccctaggcttctaaaacttgacctggaacattgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcatacacct-gaga 109  Q
    |||||||| ||| || ||||  |||| |||||| |||||||||| |||||||| ||||||||| | ||| | | | |||||| ||| | ||| || ||||    
T  36875595 aagatttgacctcggtttctgcaactggacctgaaacattgttaccatgtcacggagaagggattgaggttagcgctagaaagctgaacacatctagaga 36875496  T
Q  110 gagattaatttgcgatcttgtcctaaagtgtccactaaaattgtttcctggatgatattttcaaggccatcattgagaaaaataacagcgccgcctcaat 209  Q
    ||||||||||||| |  ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||| | |||||||| |    
T  36875495 gagattaatttgcaacattgtcatatagtgtccactaaaattgtttcctggatgatattttcaaggccatccttgagaaaaggaacaactccgcctcatt 36875396  T
Q  210 ttcgtccccatgactgtgataggaa--actcctctttgggccatgtcttgtttgctagtta 268  Q
    || |||||| |||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  36875395 tttgtccccgtgactgtgataggaattactcctctttgggcgatgtcttgtttgctagtta 36875335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 37587632 - 37587873
Alignment:
Q  5 atctcaaagatttgccctaggcttctaaaacttgacctggaacattgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcatacacc 104  Q
    |||||||||||||||||| |||||||  || | |||||| |||| |||||| ||||||||||||||||||| ||||| |  || ||||||||||||||||    
T  37587632 atctcaaagatttgcccttggcttctgcaattggacctgaaacactgttatgatgtcacagagaagggagtgaggctagctgtggaaaactgcatacacc 37587731  T
Q  105 tgagagagattaatttgcgatcttgtcctaaagtgtccactaaaattgtttcctggatgatattttcaaggccatcattgagaaaaataacagcgccgcc 204  Q
    ||||||||||||||||||||| ||||| | |||||||  |||| ||| |||||||||||| | |||  ||||||||||| | ||||||||| || |||||    
T  37587732 tgagagagattaatttgcgatattgtcgtgaagtgtctgctaacattatttcctggatgacacttttgaggccatcatttataaaaataactgctccgcc 37587831  T
Q  205 tcaatttcgtccccatgactgtgataggaaactcctctttgg 246  Q
    ||| |||| ||| | ||||  ||| ||||||||| |||||||    
T  37587832 tcattttcatcctcgtgacaatgaaaggaaactcttctttgg 37587873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 277 - 387
Target Start/End: Complemental strand, 33396667 - 33396557
Alignment:
Q  277 gtgctctgttcgagttgtaagcttctttgttttcttttatgtttcagatgttatttctctttgannnnnnnnnnctttgttgaaaatgaaaactttcatt 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  33396667 gtgctctgttcgagttgtaagcttctttgttttcttttatgtttcagatgttatttctctttgattttttctttctttgttgaaaatgaaaactttcatt 33396568  T
Q  377 tgttatatttt 387  Q
    |||||||||||    
T  33396567 tgttatatttt 33396557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 37580898 - 37581086
Alignment:
Q  5 atctcaaagatttgccctaggcttctaaaacttgacctggaacattgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcatacacc 104  Q
    ||||||| |||||||||| |||||||  |||| ||| |  ||  |||| || ||||||||||||||||||| || || || |||||||| ||||||||||    
T  37580898 atctcaatgatttgccctcggcttctgcaactggacttacaattttgtaatgatgtcacagagaagggagtgagactagtagtagaaaaatgcatacacc 37580997  T
Q  105 tgagagagattaatttgcgatcttgtcctaaagtgtccactaaaattgtttcctggatgatattttcaaggccatcattgagaaaaata 193  Q
    |||||||||||||||||| |  ||||| |||||||||   ||| |||||||||||||| | |||||||||||| |||||| ||||||||    
T  37580998 tgagagagattaatttgcaaaattgtcgtaaagtgtctggtaatattgtttcctggataacattttcaaggccttcattgcgaaaaata 37581086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 33714936 - 33715066
Alignment:
Q  8 tcaaagatttgccctaggcttctaaaacttgacctggaacattgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcatacacctga 107  Q
    ||||||| ||||||| |||||||| | || ||||||||| ||||| |||||||||| ||||||||||| ||||| ||| |||| |||||| |||||||||    
T  33714936 tcaaagagttgccctcggcttctacatctggacctggaagattgtcatcatgtcacggagaagggagtgaggctagtgttagacaactgcgtacacctga 33715035  T
Q  108 gagagattaatttgcgatcttgtcctaaagt 138  Q
    ||||||||||||||| || ||||||||||||    
T  33715036 gagagattaatttgcaatattgtcctaaagt 33715066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 37582293 - 37582495
Alignment:
Q  2 gcaatctcaaagatttgccctaggcttctaaaacttgacctggaacattgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcatac 101  Q
    |||||| |||||| || |||| |||||||| | ||  |||||||||||||| || ||| |||||||||  |||| ||||| |||||||||||||||||||    
T  37582293 gcaatcccaaagagtttccctcggcttctacatctgaacctggaacattgtcatgatggcacagagaactgagtgaggctagtggtagaaaactgcatac 37582392  T
Q  102 acctgagagagattaatttgcgatcttgtcctaaagtgtccactaaaattgtttcctggatgatattttcaaggccatcattgagaaaaataacagcgcc 201  Q
     | |||||||||||||||||| || ||||  |||||||||  || | |||||| ||  ||||||| |||  ||||||||||||||||||| || ||| ||    
T  37582393 gcttgagagagattaatttgcaatgttgttataaagtgtctgctgatattgttgccaagatgatacttttgaggccatcattgagaaaaacaatagcacc 37582492  T
Q  202 gcc 204  Q
    |||    
T  37582493 gcc 37582495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 33709048 - 33709241
Alignment:
Q  1 tgcaatctcaaagatttgccctaggcttctaaaacttgacctggaacattgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcata 100  Q
    |||||||||||||| ||||||| |||||||| | || |||||||||   ||| |||||||||| ||||||||||| ||||| ||| |||| || ||||||    
T  33709048 tgcaatctcaaagagttgccctcggcttctacatctggacctggaaggatgtcatcatgtcacggagaagggagtgaggctagtgttagacaaatgcata 33709147  T
Q  101 cacctgagagagattaatttgcgatcttgtcctaaagtgtccactaaaattgtttcctggatgatattttcaaggccatcattgagaaaaataa 194  Q
    |||||||||||| ||||||||  || ||||| |||||||||  || | | |||| ||  ||||||| |||  ||||||||||||||| ||||||    
T  33709148 cacctgagagagcttaatttggaatattgtcgtaaagtgtctgctgatactgttgccaagatgatacttttgaggccatcattgagagaaataa 33709241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 198
Target Start/End: Original strand, 51113902 - 51114052
Alignment:
Q  48 attgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcatacacctgagagagattaatttgcgatcttgtcctaaagtgtccactaa 147  Q
    ||||||| |||||||||||||||||||| | ||  ||||||||||| |||| | | || ||||||||||||||      ||||  |||||||    ||||    
T  51113902 attgttaccatgtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgcatgctaa 51114001  T
Q  148 aattgtttcctggatgatattttcaaggccatcattgagaaaaataacagc 198  Q
      ||||| |||  ||||||||||||||||||||||||||| ||||||||||    
T  51114002 ttttgttgcctcaatgatattttcaaggccatcattgagagaaataacagc 51114052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 33094071 - 33094185
Alignment:
Q  71 ggagtcaggctggtggtagaaaactgcatacacctgagagagattaatttgcgatcttgtcctaaagtgtccactaaaattgtttcctggatgatatttt 170  Q
    ||||| ||||| ||||||| |||||||| |||||| |||||||||||||||| |  ||||| |||||| ||  |||| |||||   | |||||||| |||    
T  33094071 ggagttaggctagtggtagtaaactgcaaacacctaagagagattaatttgcaacattgtcgtaaagtttctgctaatattgtcgacaggatgatacttt 33094170  T
Q  171 caaggccatcattga 185  Q
      |||||||||||||    
T  33094171 tgaggccatcattga 33094185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 266
Target Start/End: Original strand, 18724434 - 18724692
Alignment:
Q  5 atctcaaagatttgccctaggcttctaaaacttgacctggaacattgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcatacacc 104  Q
    ||||||||||||| |||| ||||| |  |||| |||||||||| ||||||| ||||||| || |||||  | ||||| ||||||||||||| || |||||    
T  18724434 atctcaaagattttccctcggcttttgcaactagacctggaacgttgttatgatgtcaccgataaggggatgaggctagtggtagaaaactacacacacc 18724533  T
Q  105 tgagagagattaatttgcgatcttgtcctaaagtgtccactaaaattgtttcctggatgatattttcaaggccatcattgagaaaaataacagcgccgcc 204  Q
    |  ||||  |||||||||||| ||||| ||| ||||| ||||  |||||   |||||||||||||| ||  ||||  || |||||||||||||| |||      
T  18724534 t--gagaccttaatttgcgatattgtcgtaatgtgtcgactactattgtagtctggatgatattttgaa-accatggttaagaaaaataacagctccggg 18724630  T
Q  205 tcaatttcgtccccatgactgtgataggaaactcctctttgggccatgtcttgtttgctagt 266  Q
    ||| ||||||||  || ||| | ||||||||||| ||||    | |||||||||||||||||    
T  18724631 tcattttcgtcctaatcactattataggaaactcttcttgcatcaatgtcttgtttgctagt 18724692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 55505343 - 55505379
Alignment:
Q  165 tattttcaaggccatcattgagaaaaataacagcgcc 201  Q
    ||||||||||||||||||||||||| |||||||||||    
T  55505343 tattttcaaggccatcattgagaaagataacagcgcc 55505379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 1528311 - 1528398
Alignment:
Q  35 cttgacctggaacattgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcatacacctgagagagattaatttgc 122  Q
    |||||| ||| |||||| ||| |||  |||||||| ||||||| ||  || ||||||||||||| ||| ||||||||||| |||||||    
T  1528311 cttgacttgggacattgctataatgagacagagaatggagtcatgcaagttgtagaaaactgcacacaactgagagagataaatttgc 1528398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 12120250 - 12120337
Alignment:
Q  35 cttgacctggaacattgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcatacacctgagagagattaatttgc 122  Q
    |||||| ||| |||||| ||| |||| |||||||| ||||||| ||   | ||||||||||||| ||| ||||||||||| |||||||    
T  12120250 cttgacttgggacattgctataatgtgacagagaatggagtcatgcaaattgtagaaaactgcacacaactgagagagataaatttgc 12120337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 1508238 - 1508272
Alignment:
Q  162 tgatattttcaaggccatcattgagaaaaataaca 196  Q
    ||||||||||||||||||| |||||||||||||||    
T  1508238 tgatattttcaaggccatcgttgagaaaaataaca 1508272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 195
Target Start/End: Complemental strand, 6006304 - 6006158
Alignment:
Q  49 ttgttatcatgtcacagagaagggagtcaggctggtggtagaaaactgcatacacctgagagagattaatttgcgatcttgtcctaaagtgtccactaaa 148  Q
    ||||||| |||||||| |||||||||| | ||  || ||||||||||||| |||  |||||||||| |||||||    ||||| |||||||    || |     
T  6006304 ttgttatgatgtcacaaagaagggagtgatgcaagtcgtagaaaactgcaaacaattgagagagataaatttgcaggattgtcataaagtggtagctgat 6006205  T
Q  149 attgtttcctggatgatattttcaaggccatcattgagaaaaataac 195  Q
     |||||  || |||| ||||| ||||||||||||||||||| |||||    
T  6006204 gttgttgacttgatggtatttacaaggccatcattgagaaagataac 6006158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 1513535 - 1513616
Alignment:
Q  58 tgtcacagagaagggagtcaggctggtggtagaaaactgcatacacctgagagagattaatttgcgatcttgtcctaaagtg 139  Q
    ||||||||||| |||||| | ||| ||| ||||||| |||| ||| ||||||||||| ||||||  || |||| ||||||||    
T  1513535 tgtcacagagatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttgaaatattgttctaaagtg 1513616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 43634058 - 43634017
Alignment:
Q  165 tattttcaaggccatcattgagaaaaataacagcgccgcctc 206  Q
    ||||||||||||||||||||||||| |||| |||||| ||||    
T  43634058 tattttcaaggccatcattgagaaagataatagcgccacctc 43634017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 14820662 - 14820598
Alignment:
Q  57 atgtcacagagaagggagtcaggctggtggtagaaaactgcatacacctgagagagattaatttg 121  Q
    |||||||||||||||| || |  |  |||||| ||||||||| ||| ||||||||||||||||||    
T  14820662 atgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttg 14820598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University