View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_53 (Length: 394)
Name: NF6076_high_53
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_53 |
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| [»] scaffold0649 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 22 - 340
Target Start/End: Original strand, 20967173 - 20967491
Alignment:
| Q |
22 |
tcactatcaagtgaagaacgaagactgtaacctagttcttggttcctccaatggattgatatgcatgctcagtcaacatatataccataatgttcaaaac |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20967173 |
tcactatcaagtgaagaacgaagactgtaacctagttcttggttcctccaatggattgatatgcatgctcagtcaacatatataccataatgttcaaaac |
20967272 |
T |
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| Q |
122 |
ttccatctccgtttctggaacccagccacgaggtcagtgtcaaaaatagtcggctgttttaccaatacttttatggaccggtatgactatttcagatttt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20967273 |
ttccatctccgtttctggaacccagccacgaggtcagtgtcaaaaatagtcggctgttttaccaatacttttatggaccggtatgactatttcagatttt |
20967372 |
T |
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| Q |
222 |
catttggttgcgataatacaaccggaaaatataaggtggtggcattcagttctgtagaagtcagagttttcactctgggtgataaattttggagaattat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20967373 |
catttggttgcgataatacaaccggaaaatataaggtggtggcattcagttctgtagaagtcagagttttcactctgggtgataaattttggagaattat |
20967472 |
T |
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| Q |
322 |
tcaaagattccctatgctt |
340 |
Q |
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| T |
20967473 |
tcaaagattccctctgctt |
20967491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 20 - 383
Target Start/End: Original strand, 20979988 - 20980360
Alignment:
| Q |
20 |
agtcactatcaagtgaagaacgaagactgtaacctagttcttggttcctccaatggattgatatgcatgctcagtcaacatatatacca------taatg |
113 |
Q |
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| T |
20979988 |
agtcactatcaatttaataacgaagactgtaaccgggttcttggttcctccaatggattgatatgcatgctcagtgaatatatataccaatacggtaatg |
20980087 |
T |
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| Q |
114 |
ttcaaaacttccatctccgtttctggaacccagccacgaggtcagtgtcaaaaatagtcggctgttttaccaatacttttatggaccggtatgactattt |
213 |
Q |
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| T |
20980088 |
ttcaaaactttcatctccgtttttggaacccagcaacgaggtcagtgtcgaaaatagtcggctgtgttagcaatgcgtttatggaccagcatgactattt |
20980187 |
T |
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| Q |
214 |
cagattttcatttggttgcgataatacaaccggaaaatataaggtggtggcattcagttctgtagaagtcagagttttcactctgggtgataaattttgg |
313 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||| ||||||||||||||| |
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| T |
20980188 |
cagattttcatttggctacgataatacaaccggaaaatataaggtggtggcattcagttccgtcgaggtgagagttttcactcttggtgataaattttgg |
20980287 |
T |
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| Q |
314 |
agaattattcaaagattccctatgcttccttttcgatgtac---tacaaatacaaatgaatgggatcaaaatg |
383 |
Q |
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| T |
20980288 |
agaattattcaaagattccctctgcttccttttcgatgtactcgtacgaatacaaatgaatgggatcgaaatg |
20980360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 4933 - 4981
Alignment:
| Q |
128 |
ctccgtttctggaacccagccacgaggtcagtgtcaaaaatagtcggct |
176 |
Q |
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| T |
4933 |
ctccgtttctggaacccggccacgaggtcagtatcgaaaagactcggct |
4981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 5013 - 5069
Alignment:
| Q |
208 |
ctatttcagattttcatttggttgcgataatacaaccggaaaatataaggtggtggc |
264 |
Q |
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|||||| | |||||| ||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
5013 |
ctatttaaaattttcgtttggttatgataacacaaccggaaaatataaggttgtggc |
5069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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