View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_56 (Length: 388)
Name: NF6076_high_56
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 371
Target Start/End: Complemental strand, 35602436 - 35602091
Alignment:
| Q |
20 |
actaatagctcaggttaattcctacttcaacttttcatttttcacaactccatattgttattttactttctctgtttactttgttgtgaatctgtaataa |
119 |
Q |
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| T |
35602436 |
actaataactcaggttaattcctacttcaacttttcatttttcacaactccatattgttattttactttctctgattactttgttgtgaatctgtaataa |
35602337 |
T |
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| Q |
120 |
tgttttcgaaatttatgttgtgaagagtgaagacctagattgaggaatagtggtgtgtgtatgatgaaaatggggggtataatttcagcacccattcgaa |
219 |
Q |
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| T |
35602336 |
tgttttcgaattttatgttgtgaaga-------cctagattgaggaatagtggtgtgtgtataatgaaaatggggggtataatttcagcacccattcgaa |
35602244 |
T |
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| Q |
220 |
atgggttgttccagctaggtctcagattctaatcaacaatttcgcttgttaaatgaagcaattaggggttgaactaggtcacaacttagtttataaaggt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35602243 |
atgggttgttccagctaggtctcagattctaatcaacaatttcgcttgttaaatgaagcaattaggggttgaactaggtcacaacttagtctataaaggt |
35602144 |
T |
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| Q |
320 |
ttcttataaagtgatttctctatgtacttgatatt-atgataaatatgcattc |
371 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35602143 |
ttcttataaagtgatttctctatgtacttgatattaatgataaatatgcattc |
35602091 |
T |
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