View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_6 (Length: 677)
Name: NF6076_high_6
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 20 - 629
Target Start/End: Original strand, 25574536 - 25575146
Alignment:
| Q |
20 |
gacatgacaccaatacatacatgtgattacgttcaaataatttatttannnnnnnaaattattattcatgtcgatttgtgagctgtgtctctgtcggtgc |
119 |
Q |
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| T |
25574536 |
gacatgacaccgatacatacatgtgattacgttcaaataatttatttatttttttaaattattattcatgtcgatttgtgagctgtgtctgtgttggtgc |
25574635 |
T |
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| Q |
120 |
ttcataatttacttgcttggaatggaattcaatannnnnnn-cttactattaaatgtgtttgtttattattgtagatgtcgttgtatttcggtaaactat |
218 |
Q |
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| T |
25574636 |
ttcataatttacttgcttggaatggaattcaatattttttttcttactattaaatgtgtttgtttattattgtagatgtcgttgtatttcggtaaactat |
25574735 |
T |
|
| Q |
219 |
cggaacgtgtttgtagagatgaacttgagcgagtttttggtagatttgggcattgtaatgttcaggtgaaaaaagaaggttatggttttgtggtgtttga |
318 |
Q |
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| T |
25574736 |
cggaacgtgtttgtagagatgaacttgagcgagtttttggtagatttgggcgttgtaatgttcaggtgaaaaaagaaggttatggttttgtggtgtttga |
25574835 |
T |
|
| Q |
319 |
tttccgttcggatgcggagaaagctttgagagaattgaaaggtagaaagatatgtggggaactgttgactttgatgtggtccaaacaacaaccggagtca |
418 |
Q |
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| T |
25574836 |
tttccgtttggatgcggagaaagctttgagggaattgaaaggtacaaagatatgtggggaactgttgactttgatgtggtccaaacaacaaccggagtca |
25574935 |
T |
|
| Q |
419 |
cattttgcaaaatttgataggggtggtgaaagaaaaggaaatacctatgagttgcaaggtaagaggatttttgacagattgggcgaaagagaaaggaaag |
518 |
Q |
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| T |
25574936 |
cattttgcaaaatttgataggggtggtgaaagaaaaggaaatacctatgagttgcaaggtaagaggatttttgacaaattgggcgaaagagaaaggaaag |
25575035 |
T |
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| Q |
519 |
aaggttttgatggatgggagaaatggaatcacaatacagatattgttgaaaggggcgagtctgttgaagagggggagtattgtcgagatggttttaagta |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25575036 |
aaggttttgatggatgggagaaatggaatcacaatacagatattgttgaaaggggcgagtctgttgaagagggggagtatcgtcgagatggttttaagta |
25575135 |
T |
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| Q |
619 |
ttgcgatggag |
629 |
Q |
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| T |
25575136 |
ttgcgatggag |
25575146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 9895196 - 9895168
Alignment:
| Q |
38 |
acatgtgattacgttcaaataatttattt |
66 |
Q |
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| T |
9895196 |
acatgtgattacgttcaaataatttattt |
9895168 |
T |
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