View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_7 (Length: 656)

Name: NF6076_high_7
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_7
NF6076_high_7
[»] chr7 (1 HSPs)
chr7 (1-656)||(41655682-41656337)


Alignment Details
Target: chr7 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 656
Target Start/End: Complemental strand, 41656337 - 41655682
Alignment:
Q  1 aatagtgcaaagttataccttgattttctggacaagcatgtatagatgttcgccaagtatctccttctgctgctctggagtagcattagcaagcatgcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41656337 aatagtgcaaagttataccttgattttctggacaagcatgtatagatgttcgccaagtatctccttctgctgctctggagtagcattagcaagcatgcta 41656238  T
Q  101 tgcagcacttctggtcccagggatcctccactagatgataatccagatcctttttccatctcacggtggcgcccactaggtacatacttagcttgcccag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41656237 tgcagcacttctggtcccaaggatcctccactagatgataatccagatcctttttccatctcacggtggcgcccactaggtacatacttagcttgcccag 41656138  T
Q  201 ttctctgcaaatgatacaaacttgagaaaacagaacagaaatatgtatgaaataaatgtatagaaagggattaaagcacaactttcgaaataaaatacaa 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41656137 ttctctgcaaatgatacgaacttgagaaaacagaacagaaatatgtatgaaataaatgtatagaaagggattaaagcacaagtttcgaaataaaatacaa 41656038  T
Q  301 acatcttcactattttatatcaaagactaaacaaaatttgctagtccgaagttcaagcacagtttcaaattatttttaaggcatagtgttgttcagaaaa 400  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41656037 acatcttcactattttatatcaaagactaaacaaaacttgctagtccgaagttcaagcacagtttcaaattatttttaaggcatagtgttgttcagaaaa 41655938  T
Q  401 acaagtagcactgggaactctgtgacacctgatagttgtgtagagaatgtgcaatgcataagcatttacatgttctctaagtgaaaagtggggctcgnnn 500  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||       
T  41655937 acaagtagcactgggaactctgtgacacctgatagttgtgtcgagaatgtgcaacgcataagcatttacatgttctataagtgagaagtggggctcgaga 41655838  T
Q  501 nnnnnnnnnnnnnnnnnnnnncctgctgagtacttgactctcttgaagagatcgctgactgagaagcctgctgggcttgtggcatatatgtaccagagtg 600  Q
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41655837 aagaaagaaagaaagaaaaaacctgctgagtacttgactctcttgaagagatcgctgactgagaagcctgctgggcttgtggcatatatgtaccagagtg 41655738  T
Q  601 agtatttccctgtgatactgcatggccattcatcctacccctattttgcctatgct 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41655737 agtatttccctgtgatactgcatggccattcatcctacccctattttgcctatgct 41655682  T

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