View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_74 (Length: 354)
Name: NF6076_high_74
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_74 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 56278802 - 56279153
Alignment:
| Q |
1 |
aggagtgttctagaacttctaaaacagttagttctcacaagcacaacacatgctatatatgtgatattggtttacatcaagaatagtcacattacatgac |
100 |
Q |
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| T |
56278802 |
aggagtgttctaggacttctaaaacagttagttctcacaagcacaacacatgctatatatgtgatattggtttacatcaagaatagtcacattacatgac |
56278901 |
T |
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| Q |
101 |
actaaagtatctcacccaattctaccaaccctgtgcattggcctattccagtatacaattaaaatagctccctgcaacgcctacatccatctcacccaac |
200 |
Q |
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| T |
56278902 |
actaaagtatctcacccaattctaccaaccctgtgcattggcctattccaatatacaattaaaatagctccctgcaacgcctacatccatctcacccaac |
56279001 |
T |
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| Q |
201 |
ataactactgaactgatcataactctgccataatgcaaaatgattcagcagtataattggcacatccatcttattgaatccaagaccagcacataataat |
300 |
Q |
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| T |
56279002 |
ataactactgaactgatcataactctgccataatgcaaaatgattcagcagtataattggcacatccatcttattgaatccaagaccagcacataataat |
56279101 |
T |
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| Q |
301 |
tttatgcgcatcccttcaacatacataaatcagttgtac--ttggtttctattatc |
354 |
Q |
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| T |
56279102 |
tttatgcgcatcccttca----acataaatcagttgtacaattggtttctattatc |
56279153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 59 - 263
Target Start/End: Original strand, 46571485 - 46571709
Alignment:
| Q |
59 |
atgtgatattggtttacatcaagaatagtcacattacatgacactaaagtatctcacccaattctaccaaccctgtgcattggcctattcca-------- |
150 |
Q |
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| T |
46571485 |
atgtgatattggtttacatcaagaatagtcacattacatgacactaaagtatctcaccaaattctaccagccccgtgcattggccaattccaaaagacag |
46571584 |
T |
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| Q |
151 |
-----gtatacaattaaaatagctccctgcaacgcctacatccatctcacccaacataact-actga----actg--atcataactctgccataatgcaa |
238 |
Q |
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| T |
46571585 |
cacccaaatacaattagaatagctccctgcaatgcctacatccatctcacccaacattgctcactcaaactactgacatcacaacttagccataatgcaa |
46571684 |
T |
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| Q |
239 |
aatgattcagcagtataattggcac |
263 |
Q |
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| T |
46571685 |
aatgattcagcactataattggcac |
46571709 |
T |
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