View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_75 (Length: 352)
Name: NF6076_high_75
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_75 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 21 - 342
Target Start/End: Original strand, 31602146 - 31602467
Alignment:
| Q |
21 |
agaggaacacgtttggaaggagaaccgaccctaaagattcctataaatacagacacacacgttaagttattcacaacttgcaaccttaaaattgaagtac |
120 |
Q |
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| T |
31602146 |
agaggaacacgtttggaaggagaaccgaccctagagattcctataaatacagacacacacgttaagttattcacaacttgcaaccttaaaattgaagtac |
31602245 |
T |
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| Q |
121 |
tactttttgtttgagtcatttatcgtactatccaataatccaaaatagttggaaacaaattaaggtggtaattaccccacaaataaaatcatgtcggttt |
220 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31602246 |
tactatttgtttgagtcatttatcttactatccaataatccaaaatagttggaaacaaattaaggtagtaattaccccacaaataaaatcatgtcggttt |
31602345 |
T |
|
| Q |
221 |
cagtaacatcatcactagttactccaacccctaatgctaactccgatttctctagacgttctgcaaattatcaccccaacatttggggggacctttttat |
320 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31602346 |
cagtaacatcatcactagttgctccaacccctaatgctaactccgatttctctagacgttctgcaaattatcaccccaacatttggggggacctttttat |
31602445 |
T |
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| Q |
321 |
tcaatatgttttggaacctatg |
342 |
Q |
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|||||||||||||||||||||| |
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| T |
31602446 |
tcaatatgttttggaacctatg |
31602467 |
T |
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