View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_79 (Length: 343)
Name: NF6076_high_79
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_79 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 8343134 - 8343456
Alignment:
| Q |
14 |
gaaattaagtgtgttaacacataatatacttcttagtttggccctcatcattgcgacaaaataacttaggaaaaataaatttgtttcatgtatatttttg |
113 |
Q |
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| T |
8343134 |
gaaattaagtgtgttaacacataatatacttcttagtttggccctcatcattgcgacaaaataacttaggaaaaataaatttgtttcatgtatatttttg |
8343233 |
T |
|
| Q |
114 |
ggggtgtcacggataaaatattatcaaaaatttagaacacatcgcgacttctcagttatcactctctgtggaat--------attatcatacatgtttca |
205 |
Q |
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| T |
8343234 |
tgggtgtcacggataaaatattatcaaaaatttagaacacatcgcgacttctcagctatcactctctgtggagtattctaccattttcatacatgtttca |
8343333 |
T |
|
| Q |
206 |
tcaattgaaaatcatacattaaactaatatggctaccaggcaagaatgaataaaataacttaggaagttaatggtttagcacagttttcgtattaaacca |
305 |
Q |
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| T |
8343334 |
taaatcgaaaatcatacattaaactgatatggctactaggcaagaatgaataaaataacttaggaagttaatggtttagcacagttttcgtattaaaaca |
8343433 |
T |
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| Q |
306 |
ttggtatctatatcccttaatac |
328 |
Q |
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| T |
8343434 |
ttggtatctatatcccttaatac |
8343456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 8329341 - 8329652
Alignment:
| Q |
14 |
gaaattaagtgtgttaacacataatatacttcttagtttggccctcatcattgcgacaaaataacttagg-aaaaataaatttgtttcatgtatattttt |
112 |
Q |
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| T |
8329341 |
gaaattaagtgtgttaacacataatatacttcttagtttggccctcatcattgtgacaaaataacttaggaaaaaataattttttttcatgtatattttt |
8329440 |
T |
|
| Q |
113 |
gggggtgtcacggataaaatattatcaaaaatttagaacacatcgcgacttctcagttatcactctctgtggaatattatcatacatgtttcatcaattg |
212 |
Q |
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| T |
8329441 |
-ggggtgtcacggataaaaaattatcaaaaatttagaacacatcgcgacttctcagttatcactat---tctaccattttcatacatgtttcatcaatag |
8329536 |
T |
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| Q |
213 |
aaaatcatacattaaactaatatggctaccaggcaagaatgaataaaataacttaggaagttaatggtttagcacagttttcgtattaaaccattggtat |
312 |
Q |
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| T |
8329537 |
aaaatcatacattaaactaatatggctactaggcaagaatgaataaaataacttaggaagttaatggtttagcacaattttcgtattaaaacattggtat |
8329636 |
T |
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| Q |
313 |
ctatatcccttaatac |
328 |
Q |
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| T |
8329637 |
ctatatcccttaatac |
8329652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 131 - 328
Target Start/End: Original strand, 8345929 - 8346121
Alignment:
| Q |
131 |
atattatcaaaaatttagaacacatcgcgacttctcagttatcactctctgtggaatattatcatacatgtttcatcaattgaaaatcatacattaaact |
230 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| | | | ||| || | |||||||||||||| ||||||||||||||||||| |
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| T |
8345929 |
atattatcaaaaatttagaacacattgcgacttctcagttatcactat---tctaccattttcgttcatgtttcatcaatagaaaatcatacattaaact |
8346025 |
T |
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| Q |
231 |
aatatggctaccaggcaagaatgaataaaataacttaggaagttaatggtttagcacagttttcgtattaaaccattggtatctatatcccttaatac |
328 |
Q |
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| T |
8346026 |
gatatggctactaggcaagaatgaataaaa--acttaggaagttgatggtttagcacagttttcgtattaaaacattggtatctatatcccttaatac |
8346121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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