View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6076_high_83 (Length: 331)

Name: NF6076_high_83
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6076_high_83
NF6076_high_83
[»] chr7 (4 HSPs)
chr7 (16-311)||(40508790-40509085)
chr7 (16-170)||(4299091-4299246)
chr7 (227-311)||(22114431-22114515)
chr7 (227-297)||(4299336-4299406)
[»] chr4 (4 HSPs)
chr4 (16-170)||(49343542-49343697)
chr4 (45-152)||(42809923-42810027)
chr4 (227-297)||(49343382-49343452)
chr4 (227-292)||(42809618-42809683)
[»] chr1 (4 HSPs)
chr1 (45-152)||(41872868-41872971)
chr1 (113-203)||(14477392-14477483)
chr1 (227-297)||(14477297-14477367)
chr1 (227-292)||(41873202-41873267)
[»] scaffold0201 (2 HSPs)
scaffold0201 (75-125)||(22286-22336)
scaffold0201 (227-292)||(21961-22026)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 40508790 - 40509085
Alignment:
Q  16 attacaattacaacttccaggttcattcattcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccagaaa 115  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40508790 attacaattacaactttcaggttcattcattcttcaccttcttcatttcacaatcaccataaacaaatttctagaaacaacatcacatgatttccagaaa 40508889  T
Q  116 caaatttccagaagtgcaacatcaaaaatcaaaacacgaattctttatccatgaatttccataattgtaacatcatatgaatttctagnnnnnnnnnnnn 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||                
T  40508890 caaatttccagaagtgcaacatcaaaaatcaaaacacgaattctttatccatgaatttccagaattgtaacatcacatgaatttctagaaatcaaaatca 40508989  T
Q  216 nnnnnnnnnnncaacatcgcatgaatttccagaattgtaaccttcatcattccttcatctcaatattcttcatcttcgtttctatattcctcattt 311  Q
               ||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40508990 aaataaaaaatcaacatcacatgaatttccagaattgcaacattcctcattccttcatctcaatattcttcatcttcgtttctatattcctcattt 40509085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 4299091 - 4299246
Alignment:
Q  16 attacaattacaacttccaggttcattcattcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccagaaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4299091 attacaattacaacttccaggttcattcattcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccataaa 4299190  T
Q  116 caaatttccagaagtgcaacatcaaaaatcaaaacacgaatt-ctttatccatgaa 170  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  4299191 caaatttccaaaagtgcaacatcaaaaatcaaaacacgaattcctttatccatgaa 4299246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 22114431 - 22114515
Alignment:
Q  227 caacatcgcatgaatttccagaattgtaaccttcatcattccttcatctcaatattcttcatcttcgtttctatattcctcattt 311  Q
    ||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22114431 caacatcacatgaatttccagaattgcaacattcctcattccttcatctcaatattcttcatcttcgtttctatattcctcattt 22114515  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 4299336 - 4299406
Alignment:
Q  227 caacatcgcatgaatttccagaattgtaaccttcatcattccttcatctcaatattcttcatcttcgtttc 297  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  4299336 caacatcacatgaatttccagaattgtaacattcctcattccttcatctcaatattcttcatcttcgtttc 4299406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 49343697 - 49343542
Alignment:
Q  16 attacaattacaacttccaggttcattcattcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccagaaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  49343697 attacaattacaacttccaggttcattcattcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccataaa 49343598  T
Q  116 caaatttccagaagtgcaacatcaaaaatcaaaacacgaatt-ctttatccatgaa 170  Q
    |||||||||| || |||||||||||||||||||||| ||||| |||||||||||||    
T  49343597 caaatttccaaaaatgcaacatcaaaaatcaaaacatgaattcctttatccatgaa 49343542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 42810027 - 42809923
Alignment:
Q  45 ttcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccagaaacaaatttccagaagtgcaacatcaaaaat 144  Q
    ||||||||||||||   ||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  42810027 ttcttcaccttctt---ttcaccatcatcttaaacaaatttccagaaacaacatcacatgattttcagaaacaaatttccagaactgcaacatcaaaaat 42809931  T
Q  145 caaaacac 152  Q
    ||||||||    
T  42809930 caaaacac 42809923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 49343452 - 49343382
Alignment:
Q  227 caacatcgcatgaatttccagaattgtaaccttcatcattccttcatctcaatattcttcatcttcgtttc 297  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  49343452 caacatcacatgaatttccagaattgtaacattcctcattccttcatctcaatattcttcatcttcgtttc 49343382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 42809683 - 42809618
Alignment:
Q  227 caacatcgcatgaatttccagaattgtaaccttcatcattccttcatctcaatattcttcatcttc 292  Q
    ||||||| |||||||||||| ||||||||| ||  ||||||||||||||||||||||||| |||||    
T  42809683 caacatcacatgaatttccataattgtaacattactcattccttcatctcaatattcttcttcttc 42809618  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 41872868 - 41872971
Alignment:
Q  45 ttcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccagaaacaaatttccagaagtgcaacatcaaaaat 144  Q
    ||||||||||||||   ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  41872868 ttcttcaccttctt---ttcaccatcaccttaaacaaatttccagaaacaacatcacatgattt-cagaaacaaatttccaaaagtggaacatcaaaaat 41872963  T
Q  145 caaaacac 152  Q
    ||||||||    
T  41872964 caaaacac 41872971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 14477483 - 14477392
Alignment:
Q  113 aaacaaatttccagaagtgcaacatcaaaaatcaaaacacgaatt-ctttatccatgaatttccataattgtaacatcatatgaatttctag 203  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||||||    
T  14477483 aaacaaatttacagaagtgcaacatcaaaaatcaaaacacgaattcctttatccatgaatttccagaattgtaaaatcacatgaatttctag 14477392  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 14477367 - 14477297
Alignment:
Q  227 caacatcgcatgaatttccagaattgtaaccttcatcattccttcatctcaatattcttcatcttcgtttc 297  Q
    ||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  14477367 caacatcacatgaatttccaaaattgtaacattcctcattccttcatctcaatattcttcatcttcgtttc 14477297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 41873202 - 41873267
Alignment:
Q  227 caacatcgcatgaatttccagaattgtaaccttcatcattccttcatctcaatattcttcatcttc 292  Q
    ||||||| |||||||||||| ||||||||| ||  ||||||||||||||||||||||||| |||||    
T  41873202 caacatcacatgaatttccataattgtaacattactcattccttcatctcaatattcttcttcttc 41873267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 22336 - 22286
Alignment:
Q  75 taaacaaatttccagaaacaacatcacatgatttccagaaacaaatttcca 125  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22336 taaacaaatttccagaaacaacatcacatgattttcagaaacaaatttcca 22286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 22026 - 21961
Alignment:
Q  227 caacatcgcatgaatttccagaattgtaaccttcatcattccttcatctcaatattcttcatcttc 292  Q
    ||||||| |||||||||||| ||||||||| ||  ||||||||||||||||||||||||| |||||    
T  22026 caacatcacatgaatttccataattgtaacattactcattccttcatctcaatattcttcttcttc 21961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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