View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_84 (Length: 331)
Name: NF6076_high_84
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_84 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 28393994 - 28393796
Alignment:
| Q |
14 |
gagagttgctttatcattcttgcttgaatcagtgttaaggtaaacaaacacaggaccaaaaacctttttatagatctctccttcttgaaatgccatggtt |
113 |
Q |
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| T |
28393994 |
gagagttgcattatcattctcacttgaagcagtgttaaggtagacaaatacaggtccaaaaacctttttataggtctctccttcttgaaatgccatggtt |
28393895 |
T |
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| Q |
114 |
acttcctttccagcatagtgtgtgctcacaaacatctaaacaaaaacaaaatatgtaaatcaaatattataaacttggaccctgagagttaatctcaac |
212 |
Q |
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| T |
28393894 |
acttcctttccagcatagtgtgtgctcacaaacatctaaacaaaaacaaaagatgtaaatcaaatattataaacttggaccctgagagttaatctcaac |
28393796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 28385649 - 28385506
Alignment:
| Q |
14 |
gagagttgctttatcattcttgcttgaatcagtgttaaggtaaacaaacacaggaccaaaaacctttttatagatctctccttcttgaaatgccatggtt |
113 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| ||||||||||||| |
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| T |
28385649 |
gagagttgtattatcattcttgcttgaatcagtgttaaggtaaacaaacacaggaccaaaaacctttttataagtttcaccttcttcaaatgccatggtt |
28385550 |
T |
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| Q |
114 |
acttcctttccagcatagtgtgtgctcacaaacatctaaacaaa |
157 |
Q |
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| T |
28385549 |
acttcctttccagcatagtgtgtgctcacaaacatctaagcaaa |
28385506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 28410455 - 28410608
Alignment:
| Q |
14 |
gagagttgctttatcattcttgcttgaatcagtgttaaggtaaacaaacacaggaccaaaaacctttttatagatctctccttcttgaaatgccatggtt |
113 |
Q |
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| T |
28410455 |
gagagttgcattatcattctcacttgaagcagtgttaaggtagacaaatataggcccaaacacctttttataagtctccccttcttcaaattccatggtt |
28410554 |
T |
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| Q |
114 |
acttcctttccagcatagtgtgtgctcacaaacatctaaacaaaaacaaaatat |
167 |
Q |
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| T |
28410555 |
acatcctttccagcatagtggggactcacaaacatctttgcaaaaacaaaatat |
28410608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 28393040 - 28392974
Alignment:
| Q |
250 |
tgaaccaatagcttatagaagatcgatttggatattgatttacttgactcattcaagactagagatt |
316 |
Q |
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| T |
28393040 |
tgaaccaatagcttatagaagatcgatttggatattgatttacttgactcattcaagactagagatt |
28392974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 151
Target Start/End: Complemental strand, 13368741 - 13368643
Alignment:
| Q |
53 |
gtaaacaaacacaggaccaaaaacctttttatagatctctccttcttgaaatgccatggttacttcctttccagcatagtgtgtgctcacaaacatcta |
151 |
Q |
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||||||||| | ||| || ||||||||||||| ||||||||| ||||||| |||| ||| || || ||||||||||| ||||| ||||||||||| |
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| T |
13368741 |
gtaaacaaagataggcccgaaaacctttttatgagtctctccttgttgaaattggatggctacgtctttaccagcatagtgggtgcttacaaacatcta |
13368643 |
T |
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