View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_86 (Length: 326)
Name: NF6076_high_86
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_86 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 38973437 - 38973142
Alignment:
| Q |
14 |
gatgtccatgacaaaatcttgtactataatctgatactgttttcccgtcatttacaatttcatataaattatagttataaattcttccaatcaatactcc |
113 |
Q |
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| T |
38973437 |
gatgtccatgacaaaatcttgtactataatctgatactgttttcccgtcatttacaatttcatataaattatagttataaattcttccaatcaatactcc |
38973338 |
T |
|
| Q |
114 |
cttctttctctctttgttcctatcatacacagtactatatgnnnnnnnatactacatctgttcttatttataaaactcttttgcaaaaatttattgtcac |
213 |
Q |
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| T |
38973337 |
cttctttctctctt-gttcctatcatacacagtactatatgtttttt-atactacatctgttcttatttataaaactcttttgcaaaaatttattgtcac |
38973240 |
T |
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| Q |
214 |
tttttataagttcctcttcaaatttatatcaaggtgcattaactaatttttcacaaaaataccttagttaattgtagagaattaaaaatcaactattt |
311 |
Q |
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| T |
38973239 |
tttttataagttcctcttcaaatttatatcaaggtgcattaactaatttttcacaaaaataccttagttaattgtagagaattaaaaatcaactattt |
38973142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 178 - 311
Target Start/End: Original strand, 41821321 - 41821449
Alignment:
| Q |
178 |
tatttataaaactcttttgcaaaaatttattgtcactttttataagttcctcttcaaatttatatcaaggtgcattaactaatttttcacaaaaatacc- |
276 |
Q |
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| T |
41821321 |
tatttataagactcatttgtaaaaatttattgtca-tttttataaaaacatcttcaaatata-----aggtgcattaattaatttttcacataaatacca |
41821414 |
T |
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| Q |
277 |
ttagttaattgtagagaattaaaaatcaactattt |
311 |
Q |
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| T |
41821415 |
ttagttaattgtggagagttaaaaatcaattattt |
41821449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 30074245 - 30074141
Alignment:
| Q |
163 |
tactacatctgttcttatttataaaactcttttgcaaaaatttattgtcactttttataagttcctcttcaaatttatatcaaggtgcattaactaattt |
262 |
Q |
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||||||||| || ||||||||||| || ||||||| ||| ||| ||||| ||||||||||| ||||||||| ||||||||||||||||| |||||| |
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| T |
30074245 |
tactacatccgtccttatttataagacccttttgccaaattttgttgtccctttttataagaacctcttcaa----atatcaaggtgcattaattaattt |
30074150 |
T |
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| Q |
263 |
ttcacaaaa |
271 |
Q |
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||||||||| |
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| T |
30074149 |
ttcacaaaa |
30074141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 51718136 - 51718076
Alignment:
| Q |
162 |
atactacatctgttcttatttataaaactcttttgcaaaaatttattgtcactttttataa |
222 |
Q |
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| T |
51718136 |
atactacctccgttcttaattataaaactcttttgataaatttttttgtccctttttataa |
51718076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 25095202 - 25095270
Alignment:
| Q |
241 |
atcaaggtgcattaactaatttttcacaaaaata-ccttagttaattgtagagaattaaaaatcaacta |
308 |
Q |
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| T |
25095202 |
atcaaggtgtattcattaatttttcacaaaaatacccctaattaattgtatagaattaaagattaacta |
25095270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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