View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_89 (Length: 322)
Name: NF6076_high_89
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_89 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 54238008 - 54238307
Alignment:
| Q |
6 |
agcagcacagaaagtatagtaagtgtgatttttctcttttatttgagtttgaaccgaaactccaactccaattatccgttaattactcaaacaagctaag |
105 |
Q |
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| T |
54238008 |
agcaacactgaaagtatagtaagtgtgatttttctcttttatttgagtttgaaccgaaactccaactccaattatccgttaattactcaaacaagctaag |
54238107 |
T |
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| Q |
106 |
ttccccaactcatgtgtgttgtctacnnnnnnnttgttggatcccttctctaaaannnnnnnaatgaatggttaattattagannnnnnnncttcttctt |
205 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| |||||||| |
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| T |
54238108 |
ttccccaactcgtgtgtgttgtctac-aaaaaattgttggatcccttctcttaaaaaaatttaatgaatggttaattattagatttttttt-ttcttctt |
54238205 |
T |
|
| Q |
206 |
tgccacaacttgaactctcttaattcaaaccaattaaactatccgtcccttctctgattggagtattaaacaagtgaaattgggcaatgaaatagtttga |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54238206 |
tgccacaacttgaactctcttaattcaaaccaattaaactatccgtcccttctctgattggagtattaaacaagtgaaattgggcaatgaagtagtttga |
54238305 |
T |
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