View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6076_high_91 (Length: 320)
Name: NF6076_high_91
Description: NF6076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6076_high_91 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 35 - 312
Target Start/End: Original strand, 34031457 - 34031734
Alignment:
| Q |
35 |
attacaatacattataaatcagcattaattaaatgtccacaatattaaaaccttgcagtactgggaccccagcaattcaagtccatgactttcctcatag |
134 |
Q |
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| T |
34031457 |
attacaatacattataaatcagcattaattaaatgtccacaatattaaaaccttgcagtactaggaccccagcaattcaagtcaatgactttcctcatag |
34031556 |
T |
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| Q |
135 |
attcttccttgcttctcttcaccttattcgaaacagcagcagatgaagcagatgacaatttcttggcttgagagtatgatctaatattgttcttagcatg |
234 |
Q |
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| T |
34031557 |
attcttccttgcttctcttcaccttattcgaaacagcagcagatgaagcagaggacaatttcttggcttgagagtatgatctaatattgttcttagcatg |
34031656 |
T |
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| Q |
235 |
ttgatgaagtgatctaaaagcatagttccacctgcatacaccaagttgatcttttaatgcttccactgctcctatgct |
312 |
Q |
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| T |
34031657 |
ttgatgaagtgatctaaaagcatagttccacctgcatacaccaagttggtcttttaatgcttccactgctcctatgct |
34031734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 43 - 312
Target Start/End: Original strand, 34029530 - 34029799
Alignment:
| Q |
43 |
acattataaatcagcattaattaaatgtccacaatattaaaaccttgcagtactgggaccccagcaattcaagtccatgactttcctcatagattcttcc |
142 |
Q |
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| T |
34029530 |
acatcataaattagcatcaattcaaagtccacaatattaaaaccttgcagtactaggaccccaacaattcaagtccatgactttcttcatagattcttcc |
34029629 |
T |
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| Q |
143 |
ttgcttctcttcaccttattcgaaacagcagcagatgaagcagatgacaatttcttggcttgagagtatgatctaatattgttcttagcatgttgatgaa |
242 |
Q |
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| T |
34029630 |
ttggttcttttcaccttgttggaaacagcagcagaagaagcagatgacaatttcttagcctgagtgtatgatctaatattgttcttagcatgttgatgaa |
34029729 |
T |
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| Q |
243 |
gtgatctaaaagcatagttccacctgcatacaccaagttgatcttttaatgcttccactgctcctatgct |
312 |
Q |
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| T |
34029730 |
gtgacctaaaagcatagttccacctgcatacaccaagttggtcttttaaagcttccactgctcctatgct |
34029799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 57 - 312
Target Start/End: Original strand, 34026616 - 34026871
Alignment:
| Q |
57 |
cattaattaaatgtccacaatattaaaaccttgcagtactgggaccccagcaattcaagtccatgactttcctcatagattcttccttgcttctcttcac |
156 |
Q |
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| T |
34026616 |
cattatttaaaagtgcacaatattaaaaccttgaagtactaggaccccgacaattcaagtcaatgactttcctcatagattcttccttgcttctcttcac |
34026715 |
T |
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| Q |
157 |
cttattcgaaacagcagcagatgaagcagatgacaatttcttggcttgagagtatgatctaatattgttcttagcatgttgatgaagtgatctaaaagca |
256 |
Q |
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| T |
34026716 |
cttgttggaaacagcagcagaagaagcagatgacaatttcttggccttagtgtatgatctgatattgctcttagcatgctgatgaaaggatctaaaagaa |
34026815 |
T |
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| Q |
257 |
tagttccacctgcatacaccaagttgatcttttaatgcttccactgctcctatgct |
312 |
Q |
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| T |
34026816 |
tggttccacctgcatacaccaagttggtcttttaaggcctccactcctcctgtgct |
34026871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 34034675 - 34034736
Alignment:
| Q |
98 |
ggaccccagcaattcaagtccatgactttcctcatagattcttccttgcttctcttcacctt |
159 |
Q |
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| T |
34034675 |
ggaccccaacaattcaggtccatgactttcttcatagattcttccttgtttctcttcccctt |
34034736 |
T |
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